Table 5 Differentially expressed genes in leaf tissue of Mentzelia filifolia from the drought-shocked treatment compared to the control. Measures of log-fold change (logFC) and false discovery rate (FDR) were used to determine significance and direction of regulation. LogFC values are in comparison to the control levels of expression from the same tissue/species
From: Inferring the genetic responses to acute drought stress across an ecological gradient
Transcript cluster ID | Annotation | logFC | FDR |
|---|---|---|---|
Cluster-58816.0 | PREDICTED: uncharacterized protein LOC104428360 | -8.37 | 0.0028 |
Cluster-48670.0 | Protein TAR1 | -7.81 | 0.0013 |
Cluster-58105.0 | Hypothetical protein CDL37_04775, partial | -7.72 | 0.0011 |
Cluster-39297.0 | Hypothetical protein CDL37_04775, partial | -7.60 | 0.0011 |
Cluster-50655.1 | Hypothetical protein T12_6945, partial | -7.59 | 0.0011 |
Cluster-41545.0 | PREDICTED: uncharacterized protein LOC109358019 | -7.52 | 0.0011 |
Cluster-60839.0 | Protein TAR1 | -7.49 | 0.0011 |
Cluster-34501.0 | Hypothetical protein BC332_34878 | -7.49 | 0.0011 |
Cluster-62161.0 | Predicted protein | -7.44 | 0.0015 |
Cluster-34654.0 | Protein TAR1 | -7.40 | 0.0011 |
Cluster-7656.2 | Transmembrane protein, putative | -7.38 | 0.0011 |
Cluster-41578.0 | Hypothetical protein BC332_34878 | -7.36 | 0.0011 |
Cluster-41545.1 | PREDICTED: uncharacterized protein LOC106795708 | -7.35 | 0.0011 |
Cluster-50091.0 | Protein TAR1 | -7.30 | 0.0011 |
Cluster-49212.0 | ATP synthase subunit beta | -7.29 | 0.0011 |
Cluster-31834.0 | Protein TAR1 | -7.28 | 0.0024 |
Cluster-49252.0 | Hypothetical protein GLYMA_13G0132002, partial | -7.23 | 0.0054 |
Cluster-34739.0 | Predicted protein | -7.22 | 0.0013 |
Cluster-36863.0 | Regulator of rDNA transcription protein 15 | -7.20 | 0.0011 |
Cluster-47860.0 | Protein TAR1 | -7.19 | 0.0011 |
Cluster-40814.0 | Protein TAR1 | -7.19 | 0.0018 |
Cluster-52445.0 | Regulator of rDNA transcription protein 15 | -7.19 | 0.0011 |
Cluster-35862.0 | Uncharacterized protein LOC110824766, partial | -7.18 | 0.0018 |
Cluster-51124.0 | Alpha-L1 nicotinic acetyl choline receptor | -7.14 | 0.0011 |
Cluster-59385.0 | Hypothetical protein CQW23_33511 | -7.14 | 0.0011 |
Cluster-37035.0 | Cytochrome P450 monooxygenase | -7.12 | 0.0015 |
Cluster-57663.0 | Predicted protein | -7.11 | 0.0011 |
Cluster-51272.0 | Regulator of rDNA transcription protein 15 | -7.10 | 0.0011 |
Cluster-60616.1 | Hypothetical protein CQW23_33755 | -7.08 | 0.0018 |
Cluster-59060.0 | Predicted protein | -7.02 | 0.0011 |
Cluster-52045.0 | Cytochrome P450 like_TBP | -7.01 | 0.0011 |
Cluster-23459.2 | Regulator of rDNA transcription protein 15 | -7.00 | 0.0011 |
Cluster-42269.0 | Protein TAR1 | -6.97 | 0.0011 |
Cluster-62261.0 | Predicted protein | -6.93 | 0.0011 |
Cluster-36057.0 | CASP-like protein 4A3 | -6.91 | 0.0011 |
Cluster-38658.0 | Protein TAR1 | -6.87 | 0.0011 |
Cluster-59522.0 | Transmembrane protein, putative | -6.84 | 0.0011 |
Cluster-63249.0 | Aquaporin TIP1-1 | -6.52 | 0.0011 |
Cluster-55831.0 | Protein TAR1-like | -6.52 | 0.0016 |
Cluster-41007.0 | Regulator of rDNA transcription protein 15 | -6.47 | 0.0021 |
Cluster-51769.0 | Regulator of rDNA transcription protein 15 | -6.37 | 0.0016 |
Cluster-56791.0 | Uncharacterized protein LOC109940280 | -6.37 | 0.0032 |
Cluster-50338.0 | Hypothetical protein BUMB_02141 | -6.31 | 0.0023 |
Cluster-31006.0 | Regulator of rDNA transcription protein 15 | -6.24 | 0.0012 |
Cluster-59353.0 | Regulator of rDNA transcription protein 15 | -6.06 | 0.0018 |
Cluster-50764.0 | Hypothetical protein T459_27227 | -6.04 | 0.0051 |
Cluster-51946.0 | Regulator of rDNA transcription protein 15 | -6.04 | 0.0034 |
Cluster-60097.0 | Regulator of rDNA transcription protein 15 | -5.89 | 0.0029 |
Cluster-42721.0 | Regulator of rDNA transcription protein 15 | -5.87 | 0.0028 |
Cluster-56732.0 | No homology | -5.72 | 0.0067 |
Cluster-35355.0 | Cytochrome P450-like TBP protein | -5.59 | 0.0137 |
Cluster-46825.0 | Regulator of rDNA transcription protein 15 | -5.57 | 0.0032 |
Cluster-53270.0 | Hypothetical protein CQW23_33511 | -5.40 | 0.0052 |
Cluster-44046.0 | Probable inactive patatin-like protein 9 | -5.06 | 0.0054 |
Cluster-32710.0 | PREDICTED: uncharacterized protein LOC104811909 | -5.04 | 0.0149 |
Cluster-34807.0 | Zinc finger protein 1 | -4.99 | 0.0189 |
Cluster-59670.0 | Senescence-associated protein, putative | -4.97 | 0.0193 |
Cluster-41530.0 | Hypothetical protein SERLA73DRAFT_67532, partial | -4.93 | 0.0011 |
Cluster-51948.0 | Hypothetical protein GLYMA_13G013900 | -4.91 | 0.0016 |
Cluster-61489.1 | Predicted protein | -4.80 | 0.0016 |
Cluster-53940.0 | Wound-responsive family protein | -4.79 | 0.0331 |
Cluster-57103.0 | Delta(24)-sterol reductase | -4.73 | 0.0185 |
Cluster-31264.0 | Hypothetical protein OXYTRI_14248 (macronuclear) | -4.70 | 0.0016 |
Cluster-61489.2 | Hypothetical protein GLYMA_13G015500, partial | -4.65 | 0.0018 |
Cluster-60530.0 | Probable inactive receptor kinase At5g67200 | -4.55 | 0.0365 |
Cluster-38796.0 | Uncharacterized protein LOC110277292 | -4.54 | 0.0025 |
Cluster-62327.0 | Uncharacterised protein | -4.47 | 0.0388 |
Cluster-61719.0 | Organ-specific protein S2-like | -4.43 | 0.0445 |
Cluster-53551.0 | Tar1p like protein | -4.38 | 0.0022 |
Cluster-55762.0 | Tar1p, partial | -4.35 | 0.0140 |
Cluster-42910.0 | PREDICTED: uncharacterized protein LOC105736981 | -4.33 | 0.0031 |
Cluster-62007.0 | Hypothetical protein GLYMA_U007300 | -4.27 | 0.0113 |
Cluster-35209.0 | No homology | -4.23 | 0.0194 |
Cluster-42867.0 | Acidic endochitinase-like | -4.22 | 0.0462 |
Cluster-50876.0 | Indole-3-acetic acid-induced protein ARG2-like | -4.16 | 0.0392 |
Cluster-48507.0 | Regulator of rDNA transcription protein 15 | -4.15 | 0.0392 |
Cluster-57366.0 | No homology | -4.10 | 0.0053 |
Cluster-52390.3 | Metallocarboxypeptidase inhibitor | -4.07 | 0.0123 |
Cluster-63044.0 | Hypothetical protein GOBAR_DD19277 | -4.05 | 0.0251 |
Cluster-54706.0 | S-adenosylmethionine decarboxylase proenzyme-like | -3.99 | 0.0270 |
Cluster-36407.0 | Hypothetical protein GLYMA_U007300 | -3.96 | 0.0093 |
Cluster-59427.0 | Hypothetical protein SERLA73DRAFT_67532, partial | -3.91 | 0.0073 |
Cluster-41436.2 | Chromosome 3B, genomic scaffold | -3.89 | 0.0117 |
Cluster-61466.0 | rRNA intron-encoded homing endonuclease, putative | -3.86 | 0.0251 |
Cluster-61875.0 | rRNA intron-encoded homing endonuclease | -3.86 | 0.0194 |
Cluster-51170.0 | UNKNOWN | -3.59 | 0.0295 |
Cluster-34949.0 | Indole-3-acetate O-methyltransferase 1 | -3.56 | 0.0270 |
Cluster-59063.0 | PREDICTED: uncharacterized protein LOC109176672 | -3.54 | 0.0178 |
Cluster-42283.0 | Senescence-associated protein | -3.48 | 0.0416 |
Cluster-34872.0 | Cold-regulated protein | -3.37 | 0.0270 |
Cluster-43131.0 | Tonoplast dicarboxylate transporter | -3.27 | 0.0445 |
Cluster-34593.0 | No homology | -3.21 | 0.0331 |
Cluster-54555.0 | No homology | -2.94 | 0.0404 |
Cluster-47071.0 | Hypothetical protein ABT39_MTgene6262 | 2.98 | 0.0451 |
Cluster-61726.0 | No homology | 3.25 | 0.0138 |
Cluster-40722.0 | No homology | 3.78 | 0.0335 |
Cluster-62217.0 | Protein RADIALIS-like 5 | 3.98 | 0.0375 |
Cluster-52889.0 | Nitrate reductase 2 | 4.13 | 0.0331 |
Cluster-33868.0 | Crocetin glucosyltransferase, chloroplastic-like | 4.32 | 0.0171 |
Cluster-63829.0 | No homology | 6.40 | 0.0024 |
Cluster-48746.0 | No homology | 7.00 | 0.0025 |
Cluster-33695.0 | Probable xyloglucan endotransglucosylase/Hydrolase protein 23 | -4.54 | 0.0080 |
Cluster-58851.0 | Pentatricopeptide repeat-containing protein At1g07590, Mitochondrial | 3.64 | 0.0134 |