Table 2 Annotation of InDels located on genome
Region | Type | AP | LP | SP |
|---|---|---|---|---|
– | INTERGENIC | 743,775 | 790,990 | 758,116 |
– | INTRAGENIC | 27,724 | 29,082 | 27,936 |
– | INTRON | 571,084 | 603,941 | 580,111 |
– | UPSTREAM | 115,552 | 121,665 | 117,912 |
– | DOWNSTREAM | 118,897 | 124,840 | 120,153 |
– | SPLICE_SITE_ACCEPTOR | 492 | 518 | 504 |
– | SPLICE_SITE_DONOR | 511 | 535 | 545 |
– | SPLICE_SITE_REGION | 3972 | 4163 | 4026 |
CDS | START_LOST | 49 | 50 | 45 |
CDS | FRAME_SHIFT | 23,316 | 24,617 | 23,509 |
CDS | CODON_INSERTION | 1228 | 1321 | 1267 |
CDS | EXON_DELETED | 1 | 1 | 1 |
CDS | CODON_DELETION | 1364 | 1432 | 1390 |
CDS | CODON_CHANGE_PLUS_CODON_DELETION | 1115 | 1151 | 1109 |
CDS | CODON_CHANGE_PLUS_CODON_INSERTION | 423 | 440 | 426 |
CDS | STOP_GAINED | 150 | 149 | 169 |
CDS | STOP_LOST | 63 | 66 | 63 |