Table 2 Details of previously identified pre-harvest sprouting resistance quantitative trait loci (QTLs) and candidate genes
From: Mapping pre-harvest sprouting resistance loci in AAC Innova × AAC Tenacious spring wheat population
QTL identified from AAC Innova/AAC Tenacious population | Previously identified QTL(s)c | Candidate gene(s)e | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Name | Chr | Genetic intervalmaxa | Physical intervalmaxb | QTL(s)/marker(s) | Genotype | Origin | Reference | Pedd | Name | Positionf |
QPhs.lrdc-1A.1 | 1A | 27.6–30.8 | 15,899,537–25,067,873 | None | – | – | – | – | None | – |
QPhs.lrdc-1A.2 | 1A | 58.4–64.0 | 30,503,486–83,683,139 | QPhs.ccsu-1A.1 | HD2329 | India | [58] | T | None | – |
QPhs.lrdc-1A.3 | 1A | 79.1–82.7 | 473,329,664–499,633,978 | Xbarc145 | AM panel | Others | [70] | NI | None | – |
QPhs.lrdc-2A | 2A | 105.4–107.4 | 651,599,654–681,046,848 | QPhs.ccsu-2A.3 | SPR8198 | India | [58] | NI | None | – |
Qphs.hwwg-2A.1 | Danby | USA | [12] | T | ||||||
QPhs.lrdc-2B.1 | 2B | 81.3–82.5 | 107,349,822–112,188,108 | None | – | – | – | – | None | – |
QPhs.lrdc-2B.2 | 2B | 86.7–91.6 | 105,533,857–118,803,206 | None | – | – | – | – | None | – |
QPhs.lrdc-2D.1 | 2D | 38.7–45.3 | 35,052,295–64,499,689 | Qphs.sau-2D | RSP | China | [56] | NS | Ppd-D1 | 36,205,433 |
QPhs.lrdc-2D.2 | 2D | 98.8–102.2 | 437,187,123–475,829,319 | None | – | – | – | – | None | – |
QPhs.lrdc-3A.1 | 3A | 6.3–9.3 | 1,241,792–12,114,082 | QPhs.pseru-3A/TaPHS1 | Rio Blanco | USA | T | MFT-A1b | 7,362,511 | |
QPhs.ocs-3A.1, QDor-3A, MFT-3A | Zenkoujikomugi | Japan | NS | |||||||
Qphs.hwwg-3A.1 | Danby | USA | [12] | T | ||||||
wsnp_Ex_rep_c67702_66370241, wsnp_Ra_c2339_4506620, Xbarc57.2 | AM panel | Others | [70] | NI | ||||||
QPhs.lrdc-3A.2a | 3A | 18.6–27.9 | 17,351,806–527,206,323 | QPhs.ocs-3A.1, QPhs.ocs-3A.2 | Zenkoujikomugi | Japan | [60] | NS | AGO802A | 239,707,025 |
QPhs.ccsu-3A.1 | SPR8198 | India | [58] | NI | ||||||
QPhs.lrdc-3B.1 | 3B | 0.7–2.3 | 858,443–6,086,589 | QGi.crc-3B | AC Domain | Canada | [71] | TI | MFT-3B-1 | 4,443,008 |
QPhs.lrdc-3B.2 | 3B | 156.1–162.8 | 774,475,703–775,489,185 | None | – | – | – | – | None | – |
QPhs.lrdc-3D.1 | 3D | 12.4–32.9 | 4,376,769–529,546,644 | QPhs.cnl-3D.1 | Cayuga | USA | [72] | T | AGO802D, HUB1, TaVp1-D1 | 181,668,030, 477,351,285, 526,085,089 |
QGi.crc-3D | AC Domain | Canada | [71] | TI | ||||||
Xbarc376 | AM panel | Others | [70] | NI | ||||||
QPhs.lrdc-3D.2 | 3D | 107.6–138.4 | 566,481,133–598,343,827 | QPhs.inra-3D | Renan | France | [34] | T | TaMyb10-D1 | 572,151,928 |
QGi.crc-3D | AC Domain | Canada | [71] | T | ||||||
TaMyb10-D1 | AM panel | Others | [70] | NI | ||||||
QPhs.lrdc-4A | 4A | 45.3–48.9 | 56,469,956–543,554,202 | Phs1 | OS21–5 | Japan | [51] | T | None | – |
Phs1 | Leader | Canada | [52] | T | ||||||
QPhs.ocs-4A.1, QDor-4A; | Zenkoujikomugi | Japan | NS | |||||||
Sprouting QTL | Opata | Mexico | [61] | T | ||||||
QPhs.lrdc-4B | 4B | 60.6–63.1 | 439,276,911–569,339,659 | QPhs.ocs-4B.1 | Chinese Spring | China | [57] | NS | None | – |
QPhs.lrdc-4D | 4D | 72.1–75.6 | 398,807,986–456,267,808 | None | – | – | – | – | None | – |
QPhs.lrdc-5A.1 | 5A | 56.4–57.3 | 160,103,131–399,974,559 | Qphs.hwwg-5A.1 | Danby | USA | [12] | TI | None | – |
QPhs.lrdc-5A.2 | 5A | 123.6–123.6 | 556,976,254–558,357,114 | None | – | – | – | – | None | – |
QPhs.lrdc-7A | 7A | 190.8–193.9 | 620,094,248–639,730,768 | None | – | – | – | – | None | – |
QPhs.lrdc-7D | 7D | 70.5–106.6 | 46,061,671–102,506,349 | QFn.crc-7D | AC Domain | Canada | [73] | TI | None | – |