Fig. 2
From: A high-continuity and annotated tomato reference genome
Alignment between the Heinz 1706 SLT1.0 and SL4.0 genomes. A Genome collinearity analysis showed that four scaffolds from SL4.0 are placed on chromosomes of the SLT1.0 genome and that there is an inversion on chromosome 2. B The color intensity of the Hi-C heatmap represents the number of links between two 25-kb windows. The presence of an inversion is supported by high-density contacts indicated by two asterisks in the Hi-C heatmap generated from SL4.0 Hi-C reads (lower left), whereas no corresponding contact is found in the SLT1.0 Hi-C heatmap (upper right). C The inversion shown in red on chromosome 2. F1, R1, F2, and R2 are primers around the break points. The blots are cropped. D Seven Heinz 1706 individuals were identified, two of which (I, III) had inversions