Table 1 Genome assembly and annotation of SLT1.0

Genome assembly (Mb)

799.09

782.52

828.08

Non-N bases

797,955,212

782,475,302

746,357,470

Number of gaps

210

286

22,700

Number of total contigs

1,615

504

-

Longest contig length (Mb)

47.16

26.29

-

N50 of contigs (Mb)

17.83

6.01

-

Number of unplaced contigs

112

176

4,374

Unplaced contigs sequence length (Mb)

8.50

9.64

20.85

Number of genes

34,384

34,075

35,768

Percentage of gene length in genome (%)

16.21

15.56

17.33

Mean gene length (bp)

3,766.53

3,572.44

4,011.09

Gene density (per Mb)

43.03

43.55

43.19

Mean coding sequence length (bp)

223.02

228.01

219.97

Mean exon length (bp)

310.11

275.03

308.36

Mean intron length (bp)

270.41

606.69

632.38

Masked repeat sequence length (Mb)

558.49

546.95

507.14

Repeats percentage of genome size (%)

69.89

69.90

61.24