| Genes | TE-proximal genes | UP | IN | DOWN | Gene-proximal TEs | Total TEs |
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A. thaliana | 27,420 | 9540 | 10,099 | 2163 | 6997 | 14,420 | 31,189 |
S. lycopersicum | 33,697 | 22,949 | 17,175 | 39,507 | 15,668 | 59,236 | 531,409 |
- Genes is the total number of protein-coding genes annotated in the genome of the species. ‘TE-proximal genes’ is the total number of protein-coding genes adjacent to well-defined TEFs. Upstream (UP), intragenic (IN) and downstream (DOWN) refer to the relative positioning of TEs to adjacent genes, up to a maximum distance of 1 kb. ‘Gene-proximal TEs’ is the unique total number of TEs in well-defined TEFs adjacent to protein-coding genes, hence a combination of the upstream, intragenic and downstream positioning, where the same TE can be in different genomic locations for different genes. ‘Total TEs’ gives the total number of TEs annotated in the genome of the species