Table 2 Strain profiles and genome assembly statistics of virulent and commensal C. perfringens strains analyzed in this study.
Strain type | Strain identification | netB status | cpb2 status | tpeL status | cnaA status | PFGE profile | Type IV pilus profile | Total genome length (Mb) | No. contigs | GC content% | No. CDS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Virulent | MLG_2313 | + | + | – | + | V3 | 9 | 3.53 | 113 | 27.99 | 3204 |
MLG_2514 | – | – | – | + | V5 | 5 | 2.95 | 722 | 29.01 | 2539 | |
MLG_1202 | + | – | – | + | V5 | 8 | 3.73 | 195 | 27.97 | 3471 | |
MLG_2915 | + | – | – | + | V5 | 10 | 3.08 | 672 | 28.80 | 2669 | |
MLG_7814 | – | – | – | + | V6 | 5 | 3.66 | 172 | 28.02 | 3415 | |
MLG_7820 | + | – | – | + | V7 | 5 | 3.54 | 286 | 28.17 | 3262 | |
Average | 3.42 | 360 | 28.33 | 3093 | |||||||
Commensal | MLG_5806 | – | – | – | – | C1 | 6 | 3.32 | 25 | 28.12 | 2955 |
MLG_4206 | – | + | – | – | C2 | 2 | 3.39 | 80 | 28.04 | 3025 | |
MLG_3406 | – | + | – | – | C2 | 7 | 3.39 | 82 | 28.05 | 3015 | |
MLG_5213 | + | + | – | + | C3 | 6 | 3.51 | 122 | 28.00 | 3196 | |
MLG_0612 | + | + | – | + | C3 | 6 | 3.51 | 91 | 27.98 | 3203 | |
MLG_3119 | – | – | – | – | C1 | 7 | 3.43 | 41 | 28.04 | 3044 | |
MLG_2919 | – | – | – | – | C1 | 20 | 3.43 | 34 | 28.04 | 3045 | |
MLG_2719 | – | – | – | – | C1 | 21 | 3.43 | 32 | 28.03 | 3044 | |
MLG_2019 | – | – | – | – | C2 | 3 | 3.22 | 88 | 28.18 | 2865 | |
MLG_1619 | – | – | – | – | C3 | 22 | 3.26 | 69 | 28.17 | 2889 | |
Average | 3.39 | 66 | 28.07 | 3028 |