From: Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus
No. | Group of Genes | Genes Names | Amount |
---|---|---|---|
1 | Photosystems I | psaA, psaB, psaC, psaI, psaJ | 5 |
2 | Photosystems II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 ** | 16 |
3 | Cytochrome b/f complex | petA, petB *, petD *, petG, petL, petN | 6 |
4 | ATP synthase | atpA, atpB, atpE, atpF, atpH, atpI | 6 |
5 | NADH dehydrogenase | ndhA *, ndhB *(×2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | 12 |
6 | Rubisco large subunit | rbcL | 1 |
7 | RNA polymerase | rpoA, rpoB, rpoC1 *, rpoC2 | 4 |
8 | Ribosomal proteins (SSU) | rps2, rps3, rps4, rps7(×2), rps8, rps11, rps12 (×3), rps14, rps15, rps16 *, rps18, rps19 | 15 |
9 | Ribosomal proteins (LSU) | rpl2 *(×2), rpl14, rpl16 *, rpl20, rpl22 *, rpl23(× 2), rpl32, rpl33, rpl36 | 11 |
10 | Assembly/stability of photosystem I | ycf4 | 1 |
11 | Transfer RNAs | 37 tRNAs (6contain an intron, 7 in the IRs) | 37 |
12 | Ribosomal RNAs | rrn4.5(×2), rrn5(×2), rrn16(× 2), rrn23(× 2) | 8 |
13 | RNA processing | matK | 1 |
14 | Carbon metabolism | cemA | 1 |
15 | Cytochrome c synthesis | ccsA | 1 |
16 | Proteins of unknown function | ycf1 *, ycf2(×2), ycf15(× 2), ycf68 | 6 |
17 | Other genes | accD, clpP **, infA | 3 |