Table 2 Gene contents in the cp genomes of Rubus species

1

Photosystems I

psaA, psaB, psaC, psaI, psaJ

5

2

Photosystems II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 **

16

3

Cytochrome b/f complex

petA, petB *, petD *, petG, petL, petN

6

4

ATP synthase

atpA, atpB, atpE, atpF, atpH, atpI

6

5

NADH dehydrogenase

ndhA *, ndhB *(×2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

12

6

Rubisco large subunit

rbcL

1

7

RNA polymerase

rpoA, rpoB, rpoC1 *, rpoC2

4

8

Ribosomal proteins (SSU)

rps2, rps3, rps4, rps7(×2), rps8, rps11, rps12 (×3), rps14, rps15, rps16 *, rps18, rps19

15

9

Ribosomal proteins (LSU)

rpl2 *(×2), rpl14, rpl16 *, rpl20, rpl22 *, rpl23(× 2), rpl32, rpl33, rpl36

11

10

Assembly/stability of photosystem I

ycf4

1

11

Transfer RNAs

37 tRNAs (6contain an intron, 7 in the IRs)

37

12

Ribosomal RNAs

rrn4.5(×2), rrn5(×2), rrn16(× 2), rrn23(× 2)

8

13

RNA processing

matK

1

14

Carbon metabolism

cemA

1

15

Cytochrome c synthesis

ccsA

1

16

Proteins of unknown function

ycf1 *, ycf2(×2), ycf15(× 2), ycf68

6

17

Other genes

accD, clpP **, infA

3