Fig. 5

An upset plot showing the number of unique and overlapping differentially expressed transcripts following methyl jasmonate (MJ) and the bark stripping (strip) treatments over time and plant parts (needles [N] and bark [B]). T7, T14 and T21 referred to sampling undertaken 7, 14 and 21 days after treatment respectively. As an example, 749 transcripts in the needles (N) were differentially expressed uniquely at T7 following MJ treatment and were not differentially expressed at any time point in the bark (B) or other time point in the needles (N). Treatments or times where overlapping transcripts occur are linked by lines. For example, the most common overlapping transcripts were the 227 that were differentially expressed only in the needles at T7 and T14 in methyl jasmonate (MJ) treatment. The other transcript combinations are ordered by their frequency of occurrence according to the various unique or overlapping combinations in which they were differentially expressed in the methyl jasmonate (MJ) and bark stripping (strip) treatments at each time. Note that no transcripts were differentially expressed in the needles following bark stripping at any time