Table 4 Different patterns of clusters in root and leaf in the time series dataset of soybean
From: New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean
Patterns | Root clusters | Leaf clusters |
|---|---|---|
up-reg-fast | Cluster3: SPX4, SPX.PHO1;2, SPX.PHO1;7, SPX.PHO1;8, SPX.PHO1;14, SPX.PHO1;6 | Cluster1: SPX1, SPX.MFS6, MFS-NLA2, MFS-NLA4, SPX.PHO1;11 |
down-reg-fast | Cluster2: SPX1, SPX10, SPX5, SPX.MFS4, SPX.NLA2, SPX.NLA4, SPX.PHO1;12 | Cluster3: SPX2, SPX.MFS2, SPX.MFS5, SPX.MFS4 |
up-reg-slow | Â | Cluster4: SPX4, SPX5, SPX.PHO1;1, SPX.PHO1;4, SPX.PHO1;6, SPX.PHO1;9 |
highest-peak-T1 | Cluster1: SPX.MFS1, SPX.PHO1;5, SPX.PHO1;10, SPX.PHO1;9, SPX.PHO1;1 | Â |
highest-peak-T2 | Cluster4: SPX.MFS5, SPX.PHO1;4, SPX.PHO1;11 | Cluster2: SPX3, SPX6, SPX7, SPX8, SPX10, SPX.NLA1, SPX.NLA3, SPX.PHO1;2, SPX.PHO1;7, SPX.PHO1;14, SPX.PHO1;5, SPX.PHO1;10, SPX.PHO1;12 |
lowest-peak-T1 | Cluster6: SPX3, SPX7, SPX8, SPX.MFS2, SPX.MFS6 | Â |
lowest-peak-T2 | Cluster5: SPX6, SPX.NLA1, SPX.NLA3 | Â |