Fig. 7
From: Context dependency of nucleotide probabilities and variants in human DNA
Density profiles of Pref - Palt for SNPs on Chromosome 1. A SNPs from 1KGP. The different lines represent SNPs with allele frequencies greater than 0, 0.01, 0.1 and 0.2, respectively. SNP counts are shown in the legend after the dash. B Density profiles show variants of ClinVar, somatic mutations (COSMIC) and 1KGP database in coding regions. C Densities of damaging and benign variants predicted by Polyphen-2 based on HumanVar database and annotated on 1KGP database by ANNOVAR software