From: Context dependency of nucleotide probabilities and variants in human DNA
A | C | G | T | |
---|---|---|---|---|
a α matrix, k=0 | ||||
A | – | 0.019 | 0.066 | 0.012 |
C | 0.025 | – | 0.034 | 0.096 |
G | 0.096 | 0.033 | – | 0.025 |
T | 0.012 | 0.065 | 0.019 | – |
b α matrix, k=1, CG sites only | ||||
ACG | 0.041 | – | 0.041 | 0.717 |
CCG | 0.035 | – | 0.066 | 0.555 |
GCG | 0.062 | – | 0.035 | 0.566 |
TCG | 0.043 | – | 0.048 | 0.483 |