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Table 1 α matrixes for k=0 and k=1 estimated by substitution model

From: Context dependency of nucleotide probabilities and variants in human DNA

 

A

C

G

T

a α matrix, k=0

A

0.019

0.066

0.012

C

0.025

0.034

0.096

G

0.096

0.033

0.025

T

0.012

0.065

0.019

b α matrix, k=1, CG sites only

ACG

0.041

0.041

0.717

CCG

0.035

0.066

0.555

GCG

0.062

0.035

0.566

TCG

0.043

0.048

0.483

  1. a: The α matrix for k=0 estimated from all chromosomes except Chr1. b: The part of the α matrix for k=1 corresponding to contexts with CG preceded by one base, so they correspond to mutations of C in these contexts