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Table 1 α matrixes for k=0 and k=1 estimated by substitution model

From: Context dependency of nucleotide probabilities and variants in human DNA

  A C G T
a α matrix, k=0
A 0.019 0.066 0.012
C 0.025 0.034 0.096
G 0.096 0.033 0.025
T 0.012 0.065 0.019
b α matrix, k=1, CG sites only
ACG 0.041 0.041 0.717
CCG 0.035 0.066 0.555
GCG 0.062 0.035 0.566
TCG 0.043 0.048 0.483
  1. a: The α matrix for k=0 estimated from all chromosomes except Chr1. b: The part of the α matrix for k=1 corresponding to contexts with CG preceded by one base, so they correspond to mutations of C in these contexts