Table 3 The significant SNPs for concentrations of total IgG, IgG1, IgG2, IgA and IgM in colostrum

col_IgG

2

BovineHD0200028482

98,947,581

G/A

0.36

−12.63

3.10

4.70E-05

col_IgG

4

ARS-BFGL-NGS-67542

190,619

A/G

0.38

13.20

2.98

9.66E-06

col_IgG

4

ARS-BFGL-NGS-114472

253,919

C/A

0.38

13.18

2.98

9.66E-06

col_IgG

4

ARS-BFGL-NGS-102812

360,794

G/A

0.38

13.18

2.98

9.66E-06

col_IgG

6

BovineHD0600021193

76,307,745

A/G

0.29

14.03

3.34

2.66E-05

col_IgG

6

BovineHD0600021227

76,365,244

G/A

0.29

14.08

3.34

2.45E-05

col_IgG

6

BovineHD0600021233

76,396,527

A/G

0.29

14.08

3.34

2.45E-05

col_IgG

6

Hapmap50522-BTA-98140

76,718,463

A/G

0.40

12.50

3.11

5.94E-05

col_IgG

6

BovineHD0600021300

76,762,984

A/C

0.41

12.70

3.07

3.57E-05

col_IgG

18

ARS-BFGL-NGS-88483

40,843,328

A/G

0.49

−13.35

2.94

5.47E-06

col_IgG

22

BovineHD2200017739

60,902,629

A/C

0.24

15.87

3.41

3.18E-06

col_IgG1

11

ARS-BFGL-NGS-27262

32,766,825

A/T

0.35

−0.31

0.07

2.94E-05

col_IgG1

11

BovineHD1100011957

40,807,680

A/G

0.35

−0.30

0.07

6.15E-05

col_IgG1

13

ARS-BFGL-NGS-11585

17,407,043

C/A

0.34

−0.39

0.08

5.10E-07

col_IgG2

20

BovineHD2000021006

71,896,856

G/A

0.27

0.24

0.04

7.30E-10

col_IgG2

21

BovineHD2100019814

67,542,721

A/C

0.36

0.16

0.04

1.09E-05

col_IgG2

21

BovineHD4100015366

67,786,313

A/G

0.42

0.14

0.04

4.99E-05

col_IgG2

21

ARS-BFGL-NGS-86477

68,399,787

A/C

0.48

−0.14

0.04

4.11E-05

col_IgG2

21

BovineHD2100020225

69,289,258

A/G

0.33

0.15

0.04

1.64E-05

col_IgG2

21

BovineHD2100020241

69,357,379

A/C

0.42

0.16

0.04

1.18E-05

col_IgG2

21

ARS-BFGL-NGS-115062

69,395,154

G/A

0.44

0.15

0.04

1.73E-05

col_IgG2

21

BovineHD2100020341

69,673,486

A/G

0.36

0.17

0.03

1.56E-06

col_IgG2

21

BovineHD2100020413

69,920,970

G/A

0.38

0.14

0.03

5.64E-05

col_IgG2

21

BovineHD2100020670

70,592,463

A/C

0.41

0.14

0.03

5.65E-05

col_IgG2

21

ARS-BFGL-NGS-2644

70,608,408

A/G

0.35

0.18

0.04

1.36E-06

col_IgG2

21

BovineHD2100020676

70,621,565

G/A

0.35

0.18

0.04

8.02E-07

col_IgG2

21

BovineHD2100020685

70,655,075

A/G

0.32

0.20

0.04

1.56E-07

col_IgG2

21

BovineHD2100020689

70,672,433

A/G

0.38

0.16

0.04

6.43E-06

col_IgG2

21

BovineHD2100020696

70,687,439

G/A

0.37

0.15

0.03

1.43E-05

col_IgG2

21

ARS-BFGL-NGS-73522

70,702,245

G/A

0.35

0.17

0.04

3.47E-06

col_IgG2

21

BovineHD2100020833

71,318,798

A/G

0.29

0.17

0.04

4.71E-06

col_IgG2

21

BovineHD2100020853

71,389,313

G/A

0.25

−0.17

0.04

4.96E-05

col_IgA

1

BovineHD0100012272

43,118,172

C/A

0.43

0.16

0.03

3.73E-06

col_IgA

1

BovineHD0100012276

43,138,880

C/A

0.43

0.16

0.03

2.16E-06

col_IgA

5

BovineHD0500021305

74,998,613

G/A

0.34

−0.15

0.03

6.46E-06

col_IgM

1

BovineHD0100012272

43,118,172

C/A

0.43

0.10

0.02

1.53E-05

col_IgM

1

BovineHD0100012276

43,138,880

C/A

0.43

0.10

0.02

1.02E-05

col_IgM

10

BovineHD1000019825

69,080,826

C/A

0.15

−0.13

0.03

1.23E-05

col_IgM

10

BovineHD1000019983

69,718,494

A/C

0.31

−0.10

0.02

1.78E-05

col_IgM

10

BovineHD1000024944

87,623,949

A/G

0.44

0.09

0.02

4.44E-05

col_IgM

10

BovineHD1000024954

87,671,849

A/G

0.44

0.09

0.02

4.44E-05

col_IgM

15

BovineHD1500000388

1,498,954

G/A

0.49

0.09

0.02

4.89E-05

col_IgM

15

BovineHD1500000626

2,664,438

A/G

0.48

−0.10

0.02

8.90E-06

col_IgM

15

BovineHD1500000698

3,061,918

A/G

0.35

−0.10

0.02

1.22E-05

col_IgM

15

BTB-01900838

4,285,360

A/G

0.32

0.10

0.02

3.98E-05

col_IgM

15

BovineHD1500001009

4,395,956

G/A

0.31

0.09

0.02

5.07E-05

col_IgM

17

ARS-BFGL-NGS-117653

73,315,120

A/C

0.40

−0.09

0.02

3.30E-05