Table 4 Summary of reads mapped to the mitogenomes of the 15 species
Sample ID | Species | Mix Sample ID | Total No. of read mapped to a particular mitogenome | No. of unique reads mapped to a particular mitogenomes (proportion) | The proportion of unique reads to all mitochondrial reads |
|---|---|---|---|---|---|
S01-R1 | A. platyrhynchos | M1-R1 | 17,350 | 13,548(78.09%) | 4.08% |
S01-R2 | M1-R2 | 16,381 | 13,560(82.78%) | 6.09% | |
S01-R3 | M1-R3 | 35,170 | 31,664(90.03%) | 11.84% | |
S02-R1 | B. taurus | M1-R1 | 19,884 | 3904(19.63%) | 1.18% |
S02-R2 | M1-R2 | 10,746 | 1840(17.12%) | 0.83% | |
S02-R3 | M1-R3 | 16,668 | 3988(23.93%) | 1.49% | |
S03-R1 | C. bactrianus | M1-R1 | 15,221 | 5330(35.02%) | 1.61% |
S03-R2 | M1-R2 | 23,387 | 16,319(69.78%) | 7.33% | |
S03-R3 | M1-R3 | 25,856 | 17,560(67.91%) | 6.56% | |
S04-R1 | C. lupus familiaris | M1-R1 | 78,416 | 37,962(48.41%) | 11.44% |
S04-R2 | M1-R2 | 51,085 | 25,057(49.50%) | 11.25% | |
S04-R3 | M1-R3 | 48,068 | 21,793(45.34%) | 8.15% | |
S05-R1 | E. caballus | M1-R1 | 49,594 | 14,541(29.32%) | 4.38% |
S05-R2 | M1-R2 | 22,297 | 8899(39.91%) | 4.00% | |
S05-R3 | M1-R3 | 42,016 | 11,305(26.91%) | 4.23% | |
S06-R1 | G. gallus | M1-R1 | 22,008 | 18,504(84.08%) | 5.58% |
S06-R2 | M1-R2 | 14,801 | 12,181(82.30%) | 5.47% | |
S06-R3 | M1-R3 | 9380 | 6094(64.97%) | 2.28% | |
S07-R1 | M. musculus | M1-R1 | 11,717 | 4963(42.36%) | 1.50% |
S07-R2 | M1-R2 | 8919 | 3896(43.68%) | 1.75% | |
S07-R3 | M1-R3 | 16,902 | 10,664(63.09%) | 3.99% | |
S08-R1 | M. putorius voucher | M1-R1 | 19,235 | 3157(16.41%) | 0.95% |
S08-R2 | M1-R2 | 20,029 | 8916(44.52%) | 4.00% | |
S08-R3 | M1-R3 | 19,847 | 7767(39.13%) | 2.90% | |
S09-R1 | M. coypus | M1-R1 | 40,437 | 33,785(83.55%) | 10.18% |
S09-R2 | M1-R2 | 29,178 | 24,375(83.54%) | 10.95% | |
S09-R3 | M1-R3 | 15,724 | 10,892(69.27%) | 4.07% | |
S10-R1 | N. procyonoides | M1-R1 | 56,355 | 16,435(29.16%) | 4.95% |
S10-R2 | M1-R2 | 27,077 | 2348(8.67%) | 1.05% | |
S10-R3 | M1-R3 | 37,645 | 11,567(30.73) | 4.32% | |
S11-R1 | O. cuniculus | M1-R1 | 10,921 | 4016(36.77%) | 1.21 |
S11-R2 | M1-R2 | 6602 | 1647(24.95%) | 0.74% | |
S11-R3 | M1-R3 | 10,260 | 4778(46.57%) | 1.79% | |
S12-R1 | O. aries | M1-R1 | 21,377 | 7895(36.93) | 2.38% |
S12-R2 | M1-R2 | 12,139 | 4084(33.64%) | 1.83% | |
S12-R3 | M1-R3 | 17,950 | 6879(38.32%) | 2.57% | |
S13-R1 | R. norvegicus | M1-R1 | 8875 | 1456(16.41%) | 0.44% |
S13-R2 | M1-R2 | 8239 | 2710(32.89%) | 1.22% | |
S13-R3 | M1-R3 | 9832 | 3098(31.51%) | 1.16% | |
S14-R1 | S. scrofa domesticus | M1-R1 | 42,116 | 28,114(66.75%) | 8.47% |
S14-R2 | M1-R2 | 20,722 | 12,040(58.10%) | 5.41% | |
S14-R3 | M1-R3 | 33,601 | 22,651(67.41%) | 8.47% | |
S15-R1 | V. vulpes | M1-R1 | 92,357 | 49,294(53.37%) | 14.85% |
S15-R2 | M1-R2 | 62,656 | 35,156(56.11%) | 15.79% | |
S15-R3 | M1-R3 | 53,858 | 25,960(48.20%) | 9.70% |