Fig. 4

Novel degradome supported targets of miRNAs in O. nivara and O. sativa. A OsPIN2 targeted by miR156 in both O. nivara and O. sativa. Blue dots and green diamonds indicate degradome reads from O. nivara and O. sativa. Red color indicates read from cut position. Relative expression of OsPIN2 is shown from two rice species and FPKM value of OsPIN2 were shown in wild type and ago18 knock down rice from Ago18 datasets. B OsLOGL3 targeted in both O. nivara and O. sativa. Blue dots and green diamonds indicate degradome reads from O. nivara and O. sativa. Red color indicates read from cut position. Relative expression of OsLOGL3 from two rice species. C Targeted only in O. nivara. Red dot indicates read from cut position. Relative expression of targets from two rice species. D Targeted only in O. sativa. Red dot indicates read from cut position. Relative expression of targets from two rice species. The qRT-PCR was performed with three biological replicates and error bars indicate sd, ** indicates P value < 0.005, * indicates P value < 0.05 and ns indicates non-significant (Student’s t test)