Table 2 Comparison of L. edodes genomes with previous reported genomes. Note that accession is the sequence accession in NCBI
|  | L808–1 | B17 | W1–26 | L54-A | L3 | NBRC 111202 | 135A | 135B |
|---|---|---|---|---|---|---|---|---|
Accession | JABFYJ00 0000000 | LSDU00 000000 | LDAT00 000000 | LOHM00 000000 | MRUK00 000000 | BDUG00 000000 | ASZD00 000000 | ASZE00 000000 |
Sequencing method | PacBio Sequel + Illumina + Hi-C | PacBio RSII + Illumina | Illumina HiSeq 2000 | Roche 454 | Illumina HiSeq | Illumina HiSeq 2500 | Illumina | Illumina |
Genome size (Mb) | 45.87 | 46.11 | 41.82 | 38.54 | 40.93 | 39.92 | 36.69 | 37.64 |
number of scaffolds | 10 | 31 | 340 | 2398 | 3043 | 1951 | 2997 | 3305 |
N50 (Mb) | 4.94 | 3.66 | 0.30 | 0.03 | 0.06 | 0.05 | 0.05 | 0.05 |
GC content (%) | 46.00 | 46.00 | 46.10 | 43.30 | 46.00 | 44.70 | 46.00 | 46.00 |
Number of genes | 9853 | 13,426 | 14,889 | – | – | 12,050 | – | – |
Average gene length (bp) | 2963 | 1612 | 2217 | – | – | – | – | – |
Reference | This work | [21] | [18] | [20] | Unpublished | [19] | Unpublished | Unpublished |