Table 2 Chromosomal location of the identified NLRs in H. villosa
From: Genome-wide identification of the NLR gene family in Haynaldia villosa by SMRT-RenSeq
NLR genes | NLR status | Chromosomal Location | |||
|---|---|---|---|---|---|
Triticum aestivum | Hordeum vulgare | Aegilops tauschii | Haynaldia villosa | ||
Hv_Contig_60_nlr_3 | Complete NLR | 1D | 1H | 1D | 1 VS |
Hv_Contig_138_nlr_2 | Complete NLR | 1A | 1H | 1D | 1 VS |
Hv_Contig_140_nlr_1 | Complete NLR | 1D | 1H | 1D | 1 VS |
Hv_Contig_232_nlr_1 | Complete NLR | 1B | 1H | 1D | 1 VS |
Hv_Contig_443_nlr_1 | Complete NLR | 1B | 1H | 1D | 1 VS |
Hv_Contig_992_nlr_1 | Complete NLR | 1A | 1H | 1D | 1 VS |
Hv_Contig_1391_nlr_1 | Complete NLR | 1A | 1H | 1D | 1 VS |
Hv_Contig_254_nlr_1 | Complete NLR | 1A | 1H | 1D | 1 VL |
Hv_Contig_452_nlr_1 | Complete NLR | 1D | 1H | 1D | 1 VL |
Hv_Contig_1453_nlr_1 | Complete NLR | 1D | 1H | 1D | 1 VL |
Hv_Contig_951 | Partial or pseudogene | 1A | 3H | 1D | 1 VS |
Hv_Contig_1193 | Partial or pseudogene | 1D | 1H | 1D | 1 VS |
Hv_Contig_141 | Partial or pseudogene | 1A | 1H | 1D | 1 VL |
Hv_Contig_219 | Partial or pseudogene | 1D | 1H | 1D | 1 VL |
Hv_Contig_512_nlr_1 | Complete NLR | 2A | 2H | 2D | 2 VS |
Hv_Contig_544_nlr_2 | Complete NLR | 2D | 2H | 2D | 2 VS |
Hv_Contig_223_nlr_1 | Complete NLR | 2B | 2H | 2D | 2 VL |
Hv_Contig_1028_nlr_1 | Complete NLR | 2D | 2H | 2D | 2 VL |
Hv_Contig_461_nlr_1 | Complete NLR | 2D | 2H | 2D | 2 VL |
Hv_Contig_1254 | Partial or pseudogene | Un | 2H | 2D | 2 VS |
Hv_Contig_35 | Partial or pseudogene | 2D | 2H | 2D | 2 VL |
Hv_Contig_139 | Partial or pseudogene | 2D | 2H | 2D | 2 VL |
Hv_Contig_667 | Partial or pseudogene | 2B | 2H | 2D | 2 VL |
Hv_Contig_716_nlr_1 | Complete NLR | 3A | 3H | 3D | 3 VS |
Hv_Contig_782_nlr_1 | Complete NLR | 3B | 3H | 3D | 3 VS |
Hv_Contig_11_nlr_1 | Complete NLR | 3D | 3H | 3D | 3 VL |
Hv_Contig_79_nlr_1 | Complete NLR | 3B | 3H | 3D | 3 VL |
Hv_Contig_326_nlr_1 | Complete NLR | 3D | 3H | 3D | 3 VL |
Hv_Contig_657_nlr_2 | Complete NLR | 3A | 3H | 3D | 3 VL |
Hv_Contig_866_nlr_1 | Complete NLR | 3B | 3H | 3D | 3 VL |
Hv_Contig_77 | Partial or pseudogene | 3A | 3H | 3D | 3 VL |
Hv_Contig_686 | Partial or pseudogene | 3B | 3H | 3D | 3 VL |
Hv_Contig_90_nlr_1 | Complete NLR | 4B | Un | 4D | 4VS |
Hv_Contig_116_nlr_1 | Complete NLR | 4D | 4H | 4D | 4VS |
Hv_Contig_322_nlr_2 | Complete NLR | 4B | 4H | 4D | 4VS |
Hv_Contig_670_nlr_1 | Complete NLR | 4B | 4H | 4D | 4VS |
Hv_Contig_28_nlr_1 | Complete NLR | 7B | 7H | 7D | 4VL |
Hv_Contig_55_nlr_1 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_82_nlr_2 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_172_nlr_1 | Complete NLR | 7B | 7H | 7D | 4VL |
Hv_Contig_299_nlr_1 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_393_nlr_1 | Complete NLR | 7A | 7H | 7D | 4VL |
Hv_Contig_648_nlr_1 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_798_nlr_1 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_913_nlr_2 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_958_nlr_1 | Complete NLR | 7B | 7H | 7D | 4VL |
Hv_Contig_1239_nlr_1 | Complete NLR | 7A | 7H | 7D | 4VL |
Hv_Contig_1300_nlr_1 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_1318_nlr_1 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_1410_nlr_1 | Complete NLR | 7D | 7H | 7D | 4VL |
Hv_Contig_120 | Partial or pseudogene | 4B | 4H | 4D | 4VS |
Hv_Contig_362 | Partial or pseudogene | 4A | 7H | 7D | 4VL |
Hv_Contig_1235 | Partial or pseudogene | 7A | 2H | 7D | 4VL |
Hv_Contig_1339 | Partial or pseudogene | 4A | 7H | 7D | 4VL |
Hv_Contig_541_nlr_1 | Complete NLR | 5D | 5H | 5D | 5 VS |
Hv_Contig_1146_nlr_1 | Complete NLR | 7D | 5H | 7D | 5 VS |
Hv_Contig_105_nlr_1 | Complete NLR | 5D | 5H | 5D | 5 VL |
Hv_Contig_253_nlr_1 | Complete NLR | 5A | 5H | 5D | 5 VL |
Hv_Contig_308_nlr_1 | Complete NLR | 5B | 5H | 7D | 5 VL |
Hv_Contig_705_nlr_1 | Complete NLR | 5D | 5H | 5D | 5 VL |
Hv_Contig_757_nlr_1 | Complete NLR | 5D | 5H | 5D | 5 VL |
Hv_Contig_937_nlr_1 | Complete NLR | 5B | Un | 5D | 5 VL |
Hv_Contig_950_nlr_1 | Complete NLR | 5B | 5H | 5D | 5 VL |
Hv_Contig_85 | Partial or pseudogene | 5B | 5H | 2D | 5 VS |
Hv_Contig_270 | Partial or pseudogene | 5B | 5H | 5D | 5 VL |
Hv_Contig_1353 | Partial or pseudogene | 5A | 5H | 6D | 5 VL |
Hv_Contig_665_nlr_1 | Complete NLR | 6B | 6H | 6D | 6VS |
Hv_Contig_39_nlr_2 | Complete NLR | 6B | 6H | 6D | 6VS |
Hv_Contig_249_nlr_2 | Complete NLR | 6B | 6H | 6D | 6VS |
Hv_Contig_514_nlr_1 | Complete NLR | 6D | 6H | 6D | 6VL |
Hv_Contig_750_nlr_1 | Complete NLR | 6B | 6H | 5D | 6VL |
Hv_Contig_860_nlr_1 | Complete NLR | 6A | 6H | 6D | 6VL |
Hv_Contig_1012 | Partial or pseudogene | 6A | 6H | 6D | 6VS |
Hv_Contig_1162 | Partial or pseudogene | 6B | 6H | Un | 6VS |
Hv_Contig_736 | Partial or pseudogene | 6D | Un | 6D | 6VS |
Hv_Contig_539 | Partial or pseudogene | 6B | 6H | 6D | 6VL |
Hv_Contig_38_nlr_2 | Complete NLR | 7A | 7H | 7D | 7VS |
Hv_Contig_55_nlr_1 | Complete NLR | 7D | 7H | 7D | 7VS |
Hv_Contig_99_nlr_3 | Complete NLR | 7D | 7H | 7D | 7VL |
Hv_Contig_508_nlr_1 | Complete NLR | 4A | 7H | 3D | 7VL |
Hv_Contig_1010_nlr_1 | Complete NLR | 7B | Un | 7D | 7VL |
Hv_Contig_1236_nlr_1 | Complete NLR | 7D | 7H | 7D | 7VL |
Hv_Contig_632 | Partial or pseudogene | 7B | 7H | 7D | 7VS |
Hv_Contig_912 | Partial or pseudogene | 7A | 7H | 7D | 7VS |
Hv_Contig_414 | Partial or pseudogene | 4A | 7H | 7D | 7VL |
Hv_Contig_940 | Partial or pseudogene | 7D | 7H | 7D | 7VL |
Hv_Contig_978 | Partial or pseudogene | 7A | 4H | 7D | 7VL |