Table 3 Orthologous genes in H. villosa corresponding to the reported NLR genes
From: Genome-wide identification of the NLR gene family in Haynaldia villosa by SMRT-RenSeq
| Â | Contig number | In silico location | Type of NLR | Length of protein (aa) | Identity to reference (%) | Coverage (%) |
|---|---|---|---|---|---|---|
Mla1 and Sr50 (at ~ 30.2 Mb) | Hv_Contig_1079_nlr_1 | 1 V | CNL | 967 | 86.7 | 86.0 |
Hv_Contig_343_nlr_1 | 1 V | CNL | 960 | 86.6 | 86.3 | |
Hv_Contig_1392_nlr_1 | 1 V | CNL | 955 | 86.9 | 86.0 | |
Hv_Contig_1173_nlr_1 | 1 V | CNL | 949 | 86.0 | 88.2 | |
Hv_Contig_1386_nlr_1 | 1 V | CNL | 954 | 85.4 | 84.2 | |
Hv_Contig_857_nlr_1 | 1 V | CNL | 973 | 85.0 | 84.1 | |
Hv_Contig_60_nlr_2 | 1 V | CNL | 866 | 87.8 | 87.9 | |
Hv_Contig_212_nlr_1 | 1 V | CNL | 951 | 87.9 | 86.2 | |
Hv_Contig_115_nlr_1 | 1 V | CNL | 941 | 87.4 | 83.5 | |
Hv_Contig_653_nlr_1 | 1 V | CNL | 882 | 87.5 | 85.9 | |
Hv_Contig_1211_nlr_1 | 1 V | CNL | 880 | 86.4 | 79.3 | |
Hv_Contig_605_nlr_1 | 1 V | CNL | 886 | 87.5 | 79.8 | |
Hv_Contig_181_nlr_1 | 1 V | CNL | 967 | 86.6 | 88.0 | |
Hv_Contig_1213_nlr_1 | 1 V | CNL | 895 | 85.1 | 86.4 | |
Hv_Contig_436_nlr_1 | 1 V | CNL | 966 | 85.9 | 84.7 | |
Hv_Contig_188_nlr_1 | 1 V | CNL | 913 | 85.8 | 80.4 | |
Hv_Contig_298_nlr_1 | 1 V | CNL | 955 | 84.7 | 85.9 | |
Hv_Contig_650_nlr_1 | 1 V | CNL | 883 | 84.8 | 86.0 | |
Mla1 and Sr50 (at ~ 8.6 Mb) | Hv_Contig_751_nlr_1 | 1 V | CNL | 921 | 84.7 | 78.6 |
Hv_Contig_1287_nlr_1 | 1 V | CNL | 932 | 86.3 | 67.1 | |
Hv_Contig_947_nlr_1 | 1 V | CNL | 948 | 85.7 | 78.1 | |
Hv_Contig_678_nlr_2 | 1 V | CNL | 967 | 85.7 | 68.1 | |
Hv_Contig_178_nlr_1 | 1 V | CNL | 967 | 85.8 | 87.7 | |
Hv_Contig_1150_nlr_1 | 1 V | CNL | 937 | 81.3 | 82.4 | |
Hv_Contig_785_nlr_1 | 1 V | CNL | 859 | 85.8 | 69.0 | |
Hv_Contig_399_nlr_1 | 1 V | CNL | 959 | 87.3 | 75.8 | |
Hv_Contig_422_nlr_1 | 1 V | CNL | 943 | 87.5 | 78.0 | |
Hv_Contig_727_nlr_1 | 1 V | CNL | 767 | 84.4 | 70.0 | |
Hv_Contig_559_nlr_1 | 1 V | CNL | 745 | 80.1 | 73.5 | |
Hv_Contig_238_nlr_1 | 1 V | CNL | 964 | 84.8 | 63.9 | |
Hv_Contig_668_nlr_1 | 1 V | CNL | 909 | 84.5 | 85.0 | |
Hv_Contig_119_nlr_2 | 1 V | CNL | 947 | 80.5 | 91.1 | |
Hv_Contig_924_nlr_1 | 1 V | CNL | 947 | 84.9 | 84.9 | |
Pm3b | Hv_Contig_1461_nlr_1 | 1 V | CNL | 1422 | 91.5 | 93.4 |
Hv_Contig_1202_nlr_1 | 1 V | CNL | 1525 | 90.1 | 100 | |
Hv_Contig_1215_nlr_1 | 1 V | CNL | 1473 | 90.4 | 93.7 | |
Hv_Contig_1186_nlr_1 | 1 V | CNL | 1485 | 84.7 | 96.9 | |
Sr45 | Hv_Contig_1433_nlr_1 | 1 V | CNL | 1204 | 91.6 | 65.2 |
Hv_Contig_1007_nlr_1 | 1 V | CNNL | 1156 | 91.6 | 61.6 | |
Hv_Contig_232_nlr_1 | 1 V | CNL | 1219 | 84.1 | 73.1 | |
Yr7 | Hv_Contig_909_nlr_1 | 2 V | CC-zf-BED-NL | 1509 | 80.0 | 82.0 |
Hv_Contig_430_nlr_1 | 2 V | zf-BED-NL | 1417 | 74.5 | 91.3 | |
RCR1 | Hv_Contig_1205_nlr_1 | 3 V | CNL | 943 | 87.8 | 96.6 |
Sr35 | Hv_Contig_191_nlr_1 | 3 V | CNL | 922 | 89.5 | 67.0 |
Hv_Contig_479_nlr_1 | 3 V | CNL | 918 | 84.3 | 78.2 | |
Lr1 | Hv_Contig_1032_nlr_1 | 5 V | CNL | 872 | 86.3 | 73.6 |
Hv_Contig_1499_nlr_1 | 5 V | NL | 1169 | 86.1 | 71.2 | |
Hv_Contig_582_nlr_1 | 5 V | CNL | 1392 | 85.3 | 77.6 | |
Pm2 | Hv_Contig_335_nlr_1 | 5 V | CNL | 1260 | 93.0 | 99.8 |
Hv_Contig_1045_nlr_1 | 5 V | CNL | 1230 | 86.1 | 89.4 | |
Hv_Contig_810_nlr_1 | 5 V | CNL | 1053 | 80.1 | 86.0 |