Table 4 The integrated domains identified in seven grass species
From: Genome-wide identification of the NLR gene family in Haynaldia villosa by SMRT-RenSeq
Integrated Domain | Description of IDs | Genomes where IDs were detected |
|---|---|---|
Thioredoxin | Thioredoxin | VV, AABBDD, AA, DD, HH, Bd, Os |
B3 | B3 DNA binding domain | VV, AABBDD, AA, DD, HH, Os |
Pkinase | Protein kinase domain | VV, AABBDD, AA, DD, HH, Bd |
Pkinase_Tyr | Protein tyrosine and serine/threonine kinase | VV, AABBDD, AA, DD, HH, Bd |
WRKY | WRKY DNA-binding domain | VV, AABBDD, AA, DD, HH, Bd |
zf-BED | BED zinc finger | VV, AABBDD, AA, DD, HH, Bd |
DDE_Tnp_4 | DDE superfamily endonuclease | VV, AABBDD, DD, HH, Bd |
PP2C | Protein phosphatase 2C | VV, AABBDD, AA, DD, HH |
Kelch_1 | Kelch motif | VV, AABBDD, AA, DD, HH |
RVT_1 | Reverse transcriptase | VV, AA |
rve | Integrase core domainV | VV, AA |
zf-RVT | Zinc-binding in reverse transcriptase | VV, AA |
DUF948 | Domain of unknown function | VV |
NAM-associated | EF-hand domain pair | VV |
PRT_C | NPR1/NIM1 like defence protein C terminal | VV |
Jacalin | Jacalin-like lectin domain | AABBDD, DD, HH, Bd, Os |
DUF761 | Cotton fibre expressed protein | AABBDD, DD, Os |
Exo70 | Exo70 exocyst complex subunit | AABBDD, AA, HH |
Motile_Sperm | MSP (major sperm protein) domain | AABBDD, AA, DD |
CG-1 | CG-1 domains | AABBDD, AA |
DUF295 | Unknown function | AABBDD, AA |
Ank_2 | Ankyrin repeats | AABBDD, AA |
TB2_DP1_HVA22 | TB2/DP1, HVA22 family | AABBDD, DD |
DUF296 | Plants and prokaryotes conserved (PCC) domain | AABBDD, DD |
GRAS | GRAS (GAI, RGA, SCR) family | AABBDD, DD |
Myb_DNA-binding | Myb-like DNA-binding domain | AABBDD, Bd |
AP2 | AP2 domain | AABBDD, Bd |
RIP | Ribosome inactivating protein | AABBDD, HH |
VQ | VQ motif | AABBDD, Os |
AvrRpt-cleavage | Cleavage site for pathogenic type III effector avirulence factor Avr | DD, HH |
BPS1 | Staphylococcal nuclease homologue | AABBDD |
CPSF100_C | Tudor domain | AABBDD |
Ceramidase | Bacterial protein of unknown function | AABBDD |
TIG | No apical meristem-associated C-terminal domain | AABBDD |
zf-RING_2 | Phosphoribosyltransferase C-terminal | AABBDD |
Aldo_ket_red | AUX/IAA family | AA |
BTB | FNIP Repeat | AA |
CwfJ_C_1 | Glutaredoxin | AA |
CwfJ_C_2 | Paired amphipathic helix repeat | AA |
DUF3420 | Zinc-finger of the FCS-type, C2-C2 | AA |
DUF3615 | LSD1 zinc finger | AA |
DUF4216 | C1 domain | AA |
DUF4218 | F-box | AA |
EF-hand_7 | Transport inhibitor response 1 protein domain | AA |
NPR1_like_C | Protein BYPASS1-related | AA |
PARP | Cleavage and polyadenylation factor 2 C-terminal | AA |
PTEN_C2 | Ceramidase | AA |
RST | IPT/TIG domain | AA |
RVT_3 | Ring finger domain | AA |
Retrotran_gag_2 | Aldo/keto reductase family | AA |
XH | BTB/POZ domain | AA |
gag_pre-integrs | Protein similar to CwfJ C-terminus 1 | AA |
tRNA_synt_2f | Protein similar to CwfJ C-terminus 2 | AA |
zf-CCHC_4 | Domain of unknown function | AA |
SNase | Protein of unknown function | DD |
TUDOR | Domain of unknown function | DD |
AUX_IAA | Poly (ADP-ribose) polymerase catalytic domain | HH |
FNIP | C2 domain of PTEN tumour-suppressor protein | HH |
Glutaredoxin | RCD1-SRO-TAF4 (RST) plant domain | HH |
PAH | Reverse transcriptase-like | HH |
zf-FLZ | Gag-polypeptide of LTR copia-type | HH |
zf-LSD1 | XH domain | HH |
C1_2 | GAG-pre-integrase domain | Os |
F-box_5 | Glycyl-tRNA synthetase beta subunit | Os |
Transp_inhibit | Zinc knuckle | Os |