Table 4 Time and memory used by Genion and LongGF during mapping and fusion calling steps on PacBio sequencing of MCF-7 breast cancer cell line
From: Genion, an accurate tool to detect gene fusion from long transcriptomics reads
| Â | Mapping | Fusion Calling | ||||
|---|---|---|---|---|---|---|
| Â | Threads # | Time (mm:ss) | Peak Memory (GB) | Threads # | Time (mm:ss) | Peak Memory (GB) |
LongGF/minimap2 | 48 | 16:47 | 44.94 | 1 | 05:28 | 1.34 |
Genion/deSALT | 48 | 24:07 | 37.25 | 1 | 14:36 | 0.85 |