Wild-type vs. 30579 (hard grain mutant) | Wild-type vs. 28511 (PHS tolerance mutant) | Wild-type vs. CS | |
---|---|---|---|
Total | 2,434 | 2,736 | 16,096,275 |
Transition | 1,579 (64.873) | 1,707 (62.390) | 11,463,128 (71.216) |
Transversion | 855 (35.127) | 1,029 (37.610) | 4,623,419 (28.724) |
Ts/Tv ratio | 1.847 | 1.659 | 2.479 |
Exon | 10 (0.411) | 12 (0.439) | 106,183 (0.660) |
Synonymous | 3 (0.123) | 2 (0.073) | 45,138 (0.280) |
Non-synonymous | 7 (0.288) | 10 (0.365) | 61,045 (0.379) |
Intron | 16 (0.657) | 20 (0.731) | 247,662 (1.539) |
UTRs | 4 (0.164) | 2 (0.073) | 50,368 (0.313) |
Intergenic | 2,411 (99.055) | 2,704 (98.830) | 15,796,460 (98.137) |
High-impact variantsa | |||
Total | 0 (0.000) | 1 (0.037) | 1,648 (0.010) |
Non-sense mutations | 0 (0.000) | 1 (0.037) | 830 (0.005) |
Start codon lost | 0 (0.000) | 0 (0.000) | 92 (0.001) |
Stop codon lost | 0 (0.000) | 0 (0.000) | 276 (0.002) |
Splice sites | 0 (0.000) | 0 (0.000) | 454 (0.003) |