Table 2 Summary statistics using two different assemblers relative to GRCz11
From: Long-read sequencing of the zebrafish genome reorganizes genomic architecture
Name | Polishing | Coverage | Total Contigs | Largest Contig | NG50 | Total Length | Run Time (d:h:m:s) |
|---|---|---|---|---|---|---|---|
Canu | None | 90.8% | 3654 | 10,261,938 | 1,359,573 | 1,422,706,407 | 42:20:42:08 |
Canu_RP | Racon + Pilon | 91.4% | 3523 | 10,335,318 | 1,383,746 | 1,432,333,057 | 43:14:47:52 |
Miniasm | None | 88% | 1118 | 24,326,764 | 3,068,968 | 1,396,816,903 | 15:31:18 |
Miniasm_RP | Racon + Pilon | 91.6% | 1118 | 24,721,058 | 3,165,400 | 1,417,315,502 | 1:01:31:41 |