Long-read sequencing of the zebrafish genome reorganizes genomic architecture

BMC Genomics

Table 3 Locations of 4 select LTR retrotransposons in the ZF1 assembly and GRCz11

Feature Name	New Location in ZF1		Original Location in GRCz11		GRCz11 location retained on ZF1?
Feature Name	contig	chrom	chrom	location	GRCz11 location retained on ZF1?
LTR-BEL39_Dre_I	utg000287I	2	18	31,647,198–31,653,445	YES
LTR-Gypsy10-I_DR	utg000090I	12	4	65,257,910–65,260,016	YES
			4	37,351,615–37,353,721	YES
			4	37,367,146–37,369,252	YES
			4	37,359,381–37,361,486	YES
			4	61,665,311–61,667,417	YES
			23	15,492,784–15,494,890	YES
LTR-BEL65_Dre_I	utg000174l	14	22	24,483,340–24,487,564	YES
LTR:Gypsy52-I_DR	utg000174l	14	21	17,987,219–17,992,432	NO
			1	53,792,801–53,798,011	YES
			17	21,872,111–21,877,324	YES
			24	20,991,265–20,996,478	NO
			16	3,788,049–3,793,262	YES

ISSN: 1471-2164