Table 2 MITE-derived miRNAs detected in wheat genome

MITE_miRNA_1

1A:117385432-117385825

+

UCUGCACCCUGAAUGAUGAAUAGU

24

MITE_524

intergenic

MITE_miRNA_2

1A:169645857-169646029

+

UAGAGAUUUCAAAUGGAACAC

21

DTT_Tdur_Thalos_103H9-1

intron

TraesCS1A02G130800

MITE_miRNA_3

1B:161992200-161992280

+

UCUGUUCACAAAUGUAAGACG

21

MITE_1125

hvu-miR6197

intron

TraesCS1B02G130500

MITE_miRNA_4

1D:147896240-147896319

+

UAUAUUUUGGUACGGAGGGAU

21

MITE_1351

intron

TraesCS1D02G131000

MITE_miRNA_5

2A:133702671-133702770

+

UGAGACGGGUAAUUUGGAACGGAG

24

DTT_Tmon_Icarus_BG607724-1

promoter

TraesCS2A02G175300

MITE_miRNA_6

2A:168984136-168984233

-

UCGGAAUUAGUUGACACUCAAA

22

MITE_926

intron

TraesCS2A02G197900

MITE_miRNA_7

2B:5671327-5671460

-

UAUCUGGACAAAUCUGAGACA

21

DTT_Hvul_Pan_M801L24-1

intron

TraesCS2B02G010300

MITE_miRNA_8

2B:84797244-84797457

-

CAUAAUCUUGAGAAUUGACCCUCC

24

MITE_1243

intergenic

MITE_miRNA_9

2B:482720682-482720772

-

AUCUUCUAUCGUGGGACGAAG

21

DTT_Taes_Athos_BJ320318-1

intron

TraesCS2B02G337800

MITE_miRNA_10

3A:19302861-19302943

+

UCCAAUUACUCGUCGUGGUUU

21

DTT_Bdis_BdisStowawayT_

tae-miR5175-5p

intron

TraesCS3A02G033400

consensus-1

MITE_miRNA_11

3B:253488744-253488823

-

AUAUUAUGUGACAGAAGGAGU

21

DTT_Taes_Athos_BJ275764-1

intron

TraesCS3B02G213700

MITE_miRNA_12

3B:587564305-587564383

+

AUUGUGUACAGAGGGAGUAGU

21

MITE_33

intron

TraesCS3B02G374400

MITE_miRNA_13

3D:76935517-76935620

-

AUCCAUAUUAGUUGUCGCUGA

21

DTT_Tmon_Icarus_BG607724-1

bdi-miR5067

promoter, intron

TraesCS3D02G121000,

TraesCS3D02G120900

MITE_miRNA_14

3D:472405006-472405092

-

ACACUUAUUUCCGAUCGGAGGG

22

MITE_361

intron

TraesCS3D02G358900

MITE_miRNA_15

3D:508204974-508205052

+

AACUGCUCCCUCCGUAAACUA

21

DTT_Taes_Athos_BJ282680-1

intergenic

MITE_miRNA_16

4A:67171695-67171971

-

ACUUCGAGGACCUGGAUGACU

21

MITE_1191

intergenic

MITE_miRNA_17

4B:429353827-429354091

+

UAAACAUCACAAACUUUGGCC

21

MITE_1569

exon, three_

TraesCS4B02G201300

prime_UTR

MITE_miRNA_18

4B:559539958-559540201

+

ACGGUCAAACUUGAAUCUCGGGAA

24

MITE_1490

intergenic

MITE_miRNA_19

4D:18693428-18693534

-

AUUUGAGCGUCAAGUAAUUCU

21

DTT_Taes_Icarus_BQ281801-1

intron

TraesCS4D02G040200

MITE_miRNA_20

4D:142764762-142764979

+

UAGGGUGUAGAAUAAGCUAUU

21

MITE_1731

intergenic

MITE_miRNA_21

4D:142764794-142764971

+

UAGCUUAUUCUACAUCCCAGU

21

MITE_1731

intergenic

MITE_miRNA_22

5A:478013119-478013226

-

UCUGUGACAAGUAAUUCGAAACGG

24

DTT_Tmon_Icarus_BG607724-1

tae-miR1135

intron

TraesCS5A02G266500

MITE_miRNA_23

5A:552632192-552632284

-

UGCGGCACUUAUUUUGGGACG

21

DTT_Tdur_Hades_294D11-1

hvu-miR5049c

intergenic

MITE_miRNA_24

5A:609867615-609867781

+

UUGUAGAGCUUUCAUUAUGGA

21

DTT_Atau_Thalos_AF338431-1

intron

TraesCS5A02G424400

MITE_miRNA_25

5B:272441139-272441265

+

AUCUGUAUGUAGUUUGUAGCGGAA

24

DTT_Hvul_Thalos_AF427791-1

intergenic

MITE_miRNA_26

5D:6108105-6108490

-

UUUGGACAUCUGACAAGCUCU

21

MITE_1134

intergenic

MITE_miRNA_27

5D:156814986-156815098

+

CUCCGUCCGGAAAUAUUUGUGGGA

24

DTT_Taes_Icarus_BJ263892-1

intergenic

MITE_miRNA_28

6A:23496429-23496595

-

UUAGAGGUUUCAAUACGGACU

21

DTT_Taes_Thalos_BJ273584-1

intergenic

MITE_miRNA_29

6B:89431495-89431654

+

CACCUAGUGGAAUCUCUAUAAAGA

24

DTT_Hvul_Thalos_BJ486760-1

intergenic

MITE_miRNA_30

6D:273095753-273095831

+

UCGGUAACUAAAUAUGAGACU

21

MITE_1736

intergenic

MITE_miRNA_31

6D:361524524-361524682

-

UUAGAGAUUUCAAUGUGGAUU

21

DTT_Null_Thalos_consensus-1

intron

TraesCS6D02G256100

MITE_miRNA_32

6D:461512362-461512720

-

AGAUGACCAAAUGAGCUGAAACUU

24

MITE_1134

promoter

TraesCS6D02G38090

MITE_miRNA_33

7A:516155427-516155555

-

AUGGACAAAAAGGGGUGUAUCUAG

24

DTT_Taes_Icarus_42j2-9

intergenic

MITE_miRNA_34

7A:668530082-668530159

+

AUGACGAGUAAAUCAGAACGG

21

DTT_Tdur_Icarus_103H9-1

intergenic

MITE_miRNA_35

7A:668530089-668530164

+

CUUCUGAUUUACUCGUCGUGG

21

DTT_Tdur_Icarus_103H9-1

intergenic

MITE_miRNA_36

7B:34679825-34679952

+

UGUCGUAGAUUUGUCUAGAUA

21

DTT_Taes_Pan_42j2-6

hvu-miR6191

intergenic

MITE_miRNA_37

7B:145795106-145795346

-

UCGGUAAACUAAUAUAAGAGC

21

DTT_Tdur_Athos_103H9-1

intergenic

MITE_miRNA_38

7B:223173899-223174050

+

UGGCAAAUCUAGUUGGUGAGC

21

MITE_955

intron

TraesCS7B02G162500