Table 3 MITE-derived miRNAs and its targets transcripts with MITE insertions detected in wheat genome
From: Genome-wide identification of MITE-derived microRNAs and their targets in bread wheat
miRNA | Targets | Cleaveland | psRNATarget | MITE in | MITE in | ||
|---|---|---|---|---|---|---|---|
name | Trascript | Region | Category | P-value | Cleavage | production region | target region |
miRNA_MITE_3 | TraesCS5B02G218100.1 | 3’ UTR | 0 | 0.003 | + | MITE_1125 | DTT_Hvul_Oleus_AF490468-1 |
miRNA_MITE_5 | TraesCS2A02G281000.1 | 3’ UTR | 1 | 0.008 | + | DTT_Tmon_Icarus_BG607724-1 | DTT_Hvul_Pan_M801L24-1 |
miRNA_MITE_5 | TraesCS1A02G090300.1 | 3’ UTR | 1 | 0.038 | + | DTT_Tmon_Icarus_BG607724-1 | DTT_Taes_Icarus_BQ281801-1 |
miRNA_MITE_7 | TraesCS4B02G021400.2 | 3’ UTR | 1 | 0.026 | + | DTT_Hvul_Pan_M801L24-1 | DTT_Taes_Pan_42j2-6 |
miRNA_MITE_7 | TraesCS2D02G449600.1 | 3’ UTR | 0 | 0.021 | + | DTT_Hvul_Pan_M801L24-1 | DTT_Taes_Pan_42j2-6 |
miRNA_MITE_10 | TraesCS2D02G578900.1 | 3’ UTR | 2 | 0.021 | + | DTT_Bdis_BdisStowawayT_consensus-1 | DTT_Bdis_BdisStowawayT_consensus-1 |
miRNA_MITE_15 | TraesCS1B02G479800.1 | 3’ UTR | 3 | 0.043 | + | DTT_Taes_Athos_BJ282680-1 | DTT_Taes_Athos_BJ282680-1 |
miRNA_MITE_22 | TraesCS7A02G355700.1 | 3’ UTR | 1 | 0.015 | + | DTT_Tmon_Icarus_BG607724-1 | DTT_Hvul_Pan_M801L24-1 |
miRNA_MITE_23 | TraesCS3A02G333900.1 | 3’ UTR | 0 | 0.007 | + | DTT_Tdur_Hades_294D11-1 | DTT_Taes_Hades_42j2-4 |
miRNA_MITE_27 | TraesCS2B02G228200.1 | 3’ UTR | 0 | 0.0 | + | DTT_Taes_Icarus_BJ263892-1 | DTT_Taes_Icarus_BJ306535-1 |
miRNA_MITE_27 | TraesCS6B02G025200.2 | 3’ UTR | 0 | 0.008 | + | DTT_Taes_Icarus_BJ263892-1 | DTT_Tdur_Icarus_294D11-3 |
miRNA_MITE_27 | TraesCS6B02G069300.2 | 3’ UTR | 1 | 0.006 | + | DTT_Taes_Icarus_BJ263892-1 | DTT_Tdur_Icarus_294D11-3 |
miRNA_MITE_27 | TraesCS1B02G325200.1 | 3’ UTR | 0 | 0.006 | + | DTT_Taes_Icarus_BJ263892-1 | DTT_Taes_Icarus_BJ306535-1 |
miRNA_MITE_27 | TraesCS6B02G005300.1 | 3’ UTR | 2 | 0.04 | + | DTT_Taes_Icarus_BJ263892-1 | DTT_Taes_Icarus_BQ605897-1 |
miRNA_MITE_27 | TraesCS6B02G036100.1 | 3’ UTR | 0 | 0.036 | + | DTT_Taes_Icarus_BJ263892-1 | DTT_Taes_Icarus_BE517313-1 |
miRNA_MITE_27 | TraesCS2D02G558100.2 | 3’ UTR | 1 | 0.005 | + | DTT_Taes_Icarus_BJ263892-1 | DTT_Hvul_Icarus_AV928891-1 |
miRNA_MITE_32 | TraesCS3B02G129400.1 | 3’ UTR | 1 | 0.003 | + | MITE_1134 | MITE_1134 |
miRNA_MITE_34 | TraesCS5B02G444200.1 | 3’ UTR | 0 | 0.002 | + | DTT_Tdur_Icarus_103H9-1 | MITE_334 |
miRNA_MITE_34 | TraesCS4D02G124600.1 | 3’ UTR | 0 | 0.005 | + | DTT_Tdur_Icarus_103H9-1 | MITE_394 |
miRNA_MITE_34 | TraesCS1A02G090300.1 | 3’ UTR | 1 | 0.046 | + | DTT_Tdur_Icarus_103H9-1 | DTT_Taes_Icarus_BQ281801-1 |
miRNA_MITE_36 | TraesCS2A02G281000.3 | 3’ UTR | 2 | 0.027 | + | DTT_Taes_Pan_42j2-6 | DTT_Hvul_Pan_M801L24-1 |
miRNA_MITE_36 | TraesCS2A02G281000.2 | 3’ UTR | 0 | 0.003 | + | DTT_Taes_Pan_42j2-6 | DTT_Hvul_Pan_M801L24-1 |
miRNA_MITE_36 | TraesCS7B02G184300.8 | 3’ UTR | 0 | 0.001 | + | DTT_Taes_Pan_42j2-6 | DTT_Hvul_Pan_M801L24-1 |
miRNA_MITE_37 | TraesCS1D02G273500.1 | 3’ UTR | 2 | 0.031 | + | DTT_Tdur_Athos_103H9-1 | DTT_Taes_Athos_42j2-5 |
miRNA_MITE_37 | TraesCS3A02G274100.1 | 3’ UTR | 0 | 0.013 | + | DTT_Tdur_Athos_103H9-1 | DTT_Tdur_Athos_103H9-1 |
miRNA_MITE_37 | TraesCS6B02G168300.1 | 3’ UTR | 0 | 0.007 | + | DTT_Tdur_Athos_103H9-1 | DTT_Taes_Athos_42j2-4 |
miRNA_MITE_37 | TraesCS6A02G276700.1 | 3’ UTR | 2 | 0.004 | + | DTT_Tdur_Athos_103H9-1 | DTT_Tmon_Athos_AF326781-1 |
miRNA_MITE_37 | TraesCSU02G068000.1 | 3’ UTR | 3 | 0.009 | + | DTT_Tdur_Athos_103H9-1 | DTT_Tdur_Athos_103H9-1 |
miRNA_MITE_37 | TraesCS1B02G479800.1 | 3’ UTR | 3 | 0.002 | + | DTT_Tdur_Athos_103H9-1 | DTT_Taes_Athos_BJ282680-1 |