Table 1 Genomic regions identified by within-breed meta-analysis from subpopulation genome-wide association analysis of daily weight gain in Landrace
Chr | Lead SNP location (bp) | Region | rs id of lead SNP | -log10(p-value) | Annotation of lead SNP | Nearest gene |
|---|---|---|---|---|---|---|
1 | 160,174,493 | 159,655,745 ~ 160,704,722 | rs343467711 | 29.19 | intergenic_variant | CDH20 |
6 | 146,958,866 | 146,482,476 ~ 147,783,245 | rs334716220 | 9.32 | intergenic_variant | LEPROT |
7 | 21,015,982 | 20,500,737 ~ 21,587,268 | rs697892846 | 9.01 | intergenic_variant | ABT1 |
12 | 3,639,288 | 3,530,556 ~ 4,277,570 | rs1109299516 | 17.48 | intron_variant | TK1 |
18 | 2,162,425 | 1,301,989 ~ 2,856,015 | rs793031877 | 8.74 | intergenic_variant | RNF32 |