Characterization of runs of homozygosity, heterozygosity-enriched regions, and population structure in cattle populations selected for different breeding goals

Table 1 Average of inbreeding coefficients estimated for the five inbreeding calculation methodologies

	F_HOM1	F_GRM	F_HOM2	F_UNI	F_ROH	< 2 Mb	2-4 Mb	4-8 Mb	8-16 Mb	> 16 Mb	< 8 Mb	> 8 Mb
ANG	−0.003	− 0.003	− 0.003	−0.003	0.043	0.000	0.014	0.015	0.010	0.004	0.029	0.014
ANGSIM	−0.026	−0.024	−0.024	− 0.024	0.001	0.000	0.001	0.000	0.000	0.000	0.001	0.000
BOR	0.002	0.002	0.002	0.002	0.012	0.001	0.006	0.001	0.001	0.002	0.008	0.004
BRM	0.014	0.011	0.011	0.011	0.036	0.001	0.020	0.007	0.006	0.002	0.028	0.008
CGU	0.024	0.024	0.024	0.024	0.018	0.000	0.005	0.003	0.004	0.006	0.009	0.009
CHL	−0.004	−0.004	−0.004	−0.004	0.018	0.000	0.005	0.005	0.004	0.004	0.011	0.008
GIR	−0.011	−0.011	− 0.011	−0.011	0.043	0.002	0.027	0.007	0.005	0.003	0.036	0.008
HFD	0.086	0.087	0.087	0.087	0.061	0.001	0.016	0.019	0.016	0.009	0.037	0.024
HOL	−0.012	−0.012	−0.012	− 0.012	0.026	0.000	0.006	0.008	0.008	0.004	0.014	0.012
JER	0.023	0.030	0.030	0.030	0.047	0.001	0.015	0.017	0.010	0.004	0.033	0.015
LMS	−0.007	−0.006	−0.006	−0.006	0.015	0.000	0.005	0.004	0.004	0.002	0.009	0.006
MON	−0.017	−0.018	−0.018	− 0.018	0.006	0.000	0.002	0.002	0.001	0.001	0.004	0.002
NEL35	−0.019	−0.019	− 0.019	−0.019	0.002	0.000	0.000	0.000	0.000	0.001	0.000	0.000
NEL50	−0.014	−0.013	−0.013	− 0.013	0.030	0.001	0.007	0.010	0.008	0.004	0.018	0.012
SEN	0.003	0.003	0.003	0.003	0.075	0.001	0.013	0.019	0.021	0.021	0.033	0.043
SGT	−0.010	−0.010	−0.010	−0.010	0.030	0.001	0.010	0.010	0.007	0.003	0.021	0.009

All breed abbreviations are defined in Table 5
F_HOM1 Inbreeding coefficient based on the number of observed and expected homozygous genotypes, F_GRM Inbreeding coefficient based on additive genotypic variance, F_HOM2 Inbreeding coefficient based on homozygosity of genotypes (Similar to F1), F_UNI Inbreeding coefficient based on the correlation between uniting gametes, F_ROH Inbreeding coefficient based on the length of the ROH’s and the total length of the autosomal genome

ISSN: 1471-2164