Characterization of runs of homozygosity, heterozygosity-enriched regions, and population structure in cattle populations selected for different breeding goals

Table 3 Heterozygous-enriched regions (HER), in the different populations, which appear in at least 10% of individuals

Breed	n animal	n HER	%	CHR	Start	End	Length	n SNP
ANG	99	20	20.20	13	40,318,645	41,433,750	1,115,105	21
HFD	61	8	13.11	1	32,091,115	33,034,361	943,246	23
HFD	61	9	14.75	1	101,195,925	104,830,589	3,634,664	47
HFD	61	9	14.75	3	75,829,200	76,986,902	1,157,702	27
HFD	61	9	14.75	3	89,652,649	90,628,822	976,173	25
HFD	61	13	21.31	6	78,147,926	79,620,230	1,472,304	25
HFD	61	12	19.67	14	50,316,790	52,240,902	1,924,112	25
HFD	61	7	11.48	20	46,124,910	46,912,182	787,272	20
HFD	61	7	11.48	24	28,353,262	29,204,162	850,900	20
MON	271	67	24.72	5	48,569,574	50,434,637	1,865,063	37
MON	271	62	22.88	5	95,248,428	96,123,569	875,141	22
MON	271	55	20.30	5	110,220,384	114,471,702	4,251,318	36
MON	271	52	19.19	12	44,975,037	46,232,946	1,257,909	21
MON	271	50	18.45	16	58,037,089	59,263,750	1,226,661	24
MON	271	35	12.92	19	60,384,670	61,177,248	792,578	23
MON	271	38	14.02	27	42,506,836	43,575,359	1,068,523	30
NEL35	209	38	18.18	23	103,505	1,712,734	1,609,229	22
NEL50	192	83	43.23	1	63,642,322	65,584,086	1,941,764	37
NEL50	192	24	12.50	2	36,202,336	37,386,478	1,184,142	23
NEL50	192	30	15.63	5	75,447,962	76,805,229	1,357,267	29
NEL50	192	26	13.54	6	77,309,507	78,206,076	896,569	24
NEL50	192	33	17.19	11	16,880,546	18,643,939	1,763,393	24
NEL50	192	23	11.98	18	23,656,888	24,920,756	1,263,868	24
NEL50	192	47	24.48	23	588,741	1,284,183	695,442	22
SEN	153	26	16.99	8	49,323,954	50,336,594	1,012,640	27
SGT	55	14	25.45	5	76,209,127	76,942,872	733,745	22

All breed abbreviations are defined in Table 5
n animal Number of animals evaluated, n HER Number of HER found in position, % Percentage of the population that presented this island, CHR Chromosome, start Start of HER, end End of HER, length HER length, n SNP Number of SNPs that HER covers

ISSN: 1471-2164