Table 4 Parameters for identifying Runs of Homozygosity in different studies with different densities of genotyping panels
Studies | SNP Panel | het | miss | trhs | gap (kb) | min (kb) | nSNP | Density | window | |
|---|---|---|---|---|---|---|---|---|---|---|
snp | kb | |||||||||
Our study | 35K, 50K | 1 | 1 | 0.05 | 1000 | 500 | 30 | 1 | 50 | 50 |
Peripolli et al. (2018a) [21] | 20K, 30K, 50K, 70K E HD | 1 | 5 | – | 500 | 1000 | 100 | 1 | 50 | 50 |
Mastrangelo et al. (2018) [4] | 50K | 1 | 1 | – | 1000 | 4000 | 30 | 1 | 100 | – |
Zavarez et al. (2015) [11] | HD | 2 | 5 | – | 500 | 100 | 30 | 1 | 100 | – |
Peripolli et al. (2020) [22] | 30K | 0 | 2 | – | 1000 | 500 | 15 | 1 | 120 | 40 |
Peripolli et al. (2018b) [23] | HD | 1 | 5 | 0.05 | 500 | 1000 | 100 | 1 | 50 | 50 |
Fonseca et al. (2016) [24] | 50K | 0 | 5 | – | 1000 | – | 15 | – | – | – |
Zanella et al. (2018) [25] | HD | 1 | 1 | – | – | 1000 | – | – | – | 50 |
Ventura et al. (2020) [26] | HD | 1 | 5 | 0.05 | 500 | 1000 | 100 | 1 | 50 | 50 |