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Table 2 Summary of the miRNAs targeting NBS-LRR genes

From: Discovery and characterization of differentially expressed soybean miRNAs and their targets during soybean mosaic virus infection unveils novel insight into Soybean-SMV interaction

miRNA

miRNA Seq

Target gene

R-0-1_R-0-2_R-0–3

Vs

R-7-1_R-7-2_R-7–3

S-0-1_S-0-2_S-0–3

Vs

S-7-1_S-7-2_S-7–3

R-0-1_R-0-2_R-0–3

Vs

R-14-1_R-14-2_R-14–3

S-0-1_S-0-2_S-0–3

vs

S-14-1_S-14-2_S-14–3

novel-miR-49

GAGAUUGGAGCAAUCAGAAUUUGUG

Glyma.18G287100.Wm82.a2.v1

down

normal

normal

normal

novel-miR-50

AAAUAAGAAGGAAUAAUGAA

Glyma.16G118600.Wm82.a2.v1

–

up

–

up

novel-miR-70

UGCGAGUGUCUUCGCCUCUG

Glyma.02G023800.Wm82.a2.v1

normal

up

normal

up

novel-miR-449

AAGAGGCUUGUAGAAGAAGUC

Glyma.15G168500.Wm82.a2.v1

normal

up

normal

up

novel-miR-466

AGCAUCUUAAAACACUUGAAU

Glyma.16G118600.Wm82.a2.v1

normal

up

–

up

gma-miR10440

UUGGGACAAUACUUUAGAUAU

Glyma.13G184800.Wm82.a2.v1

normal

up

normal

up

gma-miR10440

UUGGGACAAUACUUUAGAUAU

Glyma.13G188300.Wm82.a2.v1

normal

up

normal

up

gma-miR10440

UUGGGACAAUACUUUAGAUAU

Glyma.13G190400.Wm82.a2.v1

normal

up

normal

up

gma-miR10440

UUGGGACAAUACUUUAGAUAU

Glyma.13G190800.Wm82.a2.v1

normal

up

normal

up

gma-miR10440

UUGGGACAAUACUUUAGAUAU

Glyma.13G193300.Wm82.a2.v1

normal

up

normal

up

gma-miR1507a

UCUCAUUCCAUACAUCGUCUGA

Glyma.04G137800.Wm82.a2.v1

normal

down

normal

normal

gma-miR2118a-3p

UUGCCGAUUCCACCCAUUCCU

Glyma.13G184800.Wm82.a2.v1

normal

up

normal

up

gma-miR2118a-3p

UUGCCGAUUCCACCCAUUCCU

Glyma.13G187900.Wm82.a2.v1

normal

up

normal

up

gma-miR2118a-3p

UUGCCGAUUCCACCCAUUCCU

Glyma.13G188300.Wm82.a2.v1

normal

up

normal

up

gma-miR390d

AAGCUCAGGAGGGAUAGCACC

Glyma.20G100500.Wm82.a2.v1

normal

normal

normal

up

gma-miR5041-5p

UUUCAUCUUCAACUUGCUCAA

Glyma.13G190300.Wm82.a2.v1

normal

up

normal

normal

gma-miR5041-5p

UUUCAUCUUCAACUUGCUCAA

Glyma.13G190400.Wm82.a2.v1

normal

up

normal

normal

gma-miR5041-5p

UUUCAUCUUCAACUUGCUCAA

Glyma.13G193100.Wm82.a2.v1

normal

up

normal

normal

gma-miR5041-5p

UUUCAUCUUCAACUUGCUCAA

Glyma.13G193300.Wm82.a2.v1

normal

up

normal

normal

  1. Note: miRNA: Differentially expressed miRNAs targeting NBS-LRR genes
  2. miRNA Seq: The corresponding miRNA sequences
  3. Target gene: NBS-LRR genes predicted by corresponding miRNAs
  4. R-0–1, R-0–2, R-0–3 vs R-7–1, R-7–2, R-7–3: The variation trend of corresponding miRNAs from 7 to 0 dpi in resistant line
  5. S-0–1, S-0–2, S-0–3 vs S-7–1, S-7–2, S-7–3: The variation trend of corresponding miRNAs from 7 to 0 dpi in susceptible line
  6. R-0–1, R-0–2, R-0–3 vs R-14–1, R-14–2, R-14–3: The variation trend of corresponding miRNAs from 14 to 0 dpi in resistant line
  7. S-0–1, S-0–2, S-0–3 vs S-14–1, S-14–2, S-14–3: The variation trend of corresponding miRNAs from 14 to 0 dpi in susceptible line
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BMC Genomics

ISSN: 1471-2164

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