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Table 3 Structural Variant (SV) types identified comparing ‘Nebbiolo’ CVT 71 haplotypes

From: ‘Nebbiolo’ genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.)

SV calling approach

DELs

INSs/DUPs

INVs

TOT

Cumulative size of SVs (Mbp)

PacBio SMRT

13,138

8,016

87

21,241

79.6

10 × Genomics

10,056

18

9

10,083

54.1

Genome

9,845

9,352

87

20,010

52.0