Table 1 Summary of complete chloroplast genomes of Ilex species included in the present study. PCG indicates protein-coding gene

Ilex asprella

NC_045274

94

37

8

139

157,856

87,265

26,075

18,441

37.62

62.38

I. asprella var. tapuensis

MT767004

87

37

8

132

157,671

87,161

26,065

18,380

37.65

62.35

I. championii

MT764248

87

37

8

132

157,468

86,878

26,074

18,442

37.64

62.36

I. chapaensis

MT764251

87

37

8

132

157,665

87,155

26,065

18,380

37.65

62.35

I. cinerea

MT764247

87

37

8

132

157,215

86,601

26,094

18,426

37.69

62.31

I. cornuta

MT764252

87

37

8

132

157,216

86,607

26,091

18,427

37.69

62.31

I. crenata

MW528027

88

38

8

134

157,988

87,414

26,076

18,422

37.65

62.35

I. dabieshanensis

MT435529

90

37

8

135

157,218

86,723

26,034

18,427

37.69

62.31

I. dasyphylla

This study

92

40

8

140

158,009

87,388

26,105

18,411

37.62

62.38

I. dasyphylla

MT764253

87

37

8

132

158,009

87,388

26,105

18,411

37.62

62.38

I. delavayi

KX426470

95

40

8

143

157,671

87,077

26,078

18,438

37.65

62.35

I. dumosa

KP016927

86

37

8

131

157,732

87,033

26,087

18,415

37.62

62.27

I. ficoidea

MT764243

87

37

8

132

157,536

86,922

26,094

18,426

37.64

62.36

I. fukienensis

This study

91

40

8

139

157,474

86,886

26,074

18,440

37.64

62.36

I. graciliflora

MT764249

87

37

8

132

157,119

86,506

26,093

18,427

37.61

62.39

I. hanceana

MT764246

87

37

8

132

157,478

86,889

26,074

18,441

37.63

62.37

I. integra

NC_044417

86

37

8

131

157,548

86,936

26,093

18,426

37.64

62.36

I. intermedia

MT471320

89

37

8

134

157,577

87,083

26,034

18,426

37.63

62.37

I. kwangtungensis

MT764241

87

37

8

132

158,020

87,400

26,104

18,412

37.62

62.38

I. lancilimba

MT767005

87

37

8

132

157,998

87,382

26,105

18,406

37.62

62.38

I. latifolia

NC_047291

95

40

8

143

157,601

87,020

26,077

18,427

37.63

62.37

I. lohfauensis

This study

91

40

8

139

157,464

86,875

26,071

18,447

37.64

62.36

I. lohfauensis

MT764240

87

37

8

132

157,470

86,873

26,078

18,441

37.64

62.36

I. memecylifolia

MT764250

87

37

8

132

157,842

87,249

26,076

18,441

37.62

62.38

I. micrococca

MN830251

89

37

8

134

157,782

87,200

26,074

18,434

37.64

62.36

I. paraguariensis

NC_031207

86

37

8

131

157,614

87,154

26,076

18,308

37.63

62.35

I. polyneura

KX426468

95

40

8

143

157,621

87,140

26,061, 25,980

18,434

37.60

62.40

I. pubescens

KX426467

95

40

8

143

157,741

87,143

26,081

18,436

37.61

62.39

I. purpurea

MT471318

89

37

8

134

157,885

87,289

26,104

18,388

37.62

62.38

I. rotunda

MW292559

88

37

8

133

157,743

87,069

26,121

18,432

37.62

62.38

I. sp.

KX426469

95

40

8

143

157,611

87,137

26,020

18,434

37.62

62.38

I. suaveolens

MN830249

89

37

8

134

157,857

87,255

26,102

18,398

37.65

62.35

I. szechwanensis

KX426466

95

40

8

143

157,822

87,281

26,053

18,435

37.65

62.35

I. triflora

MT764242

87

36

8

131

157,706

87,183

26,065

18,393

37.67

62.33

I. venusta

This study

91

40

8

139

157,860

87,290

26,079

18,412

37.66

62.34

I. viridis

This study

91

40

8

139

157,673

87,150

26,065

18,393

37.68

62.32

I. viridis

MN830250

89

37

8

134

157,701

87,177

26,065

18,394

37.67

62.33

I. vomitoria

MT471319

90

36

8

134

157,328

86,920

26,005

18,398

37.66

62.34

I. wilsonii

KX426471

95

40

8

143

157,918

87,341

26,073

18,431

37.62

62.38

I. yunnanensis

This study

91

40

8

139

157,833

87,389

26,108

18,228

37.65

62.35

I. zhejiangensis

This study

91

40

8

139

157,182

86,575

26,092

18,423

37.69

62.31