Table 2 List of annotated genes in the chloroplast genomes of the Ilex species

Protein synthesis and DNA-replication

Transfer RNAs

trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC^a, trnG-UCC, trnH-GUG, trnK-UUU^a,, trnL-UAA^a,, trnM-CAU, trnQ-UUG, trnP-GGG, trnP-UGG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU (× 2), trnT-UGU, trnV-UAC^a,, trnW-CCA, trnY-GUA, trnA-UGC^a, (× 2), trnI-CAU (× 2), trnI-GAU^a, (× 2), trnL-CAA (× 2), trnL-UAG, trnN-GUU (× 2), trnR-ACG (× 2), trnV-GAC (× 2), trnM-CAU

Ribosomal RNAs

rrn4.5 (× 2), rrn5 (× 2), rrn16 (× 2), rrn23 (× 2)

Ribosomal protein large subunit

rpl33, rpl20, rpl36, rpl14, rpl16, rpl22, rpl32, rpl2^a, (×  2), rpl23 (×  2)

Ribosomal protein small subunit

rps2, rps14, rps4, rps18, rps11, rps8, rps3, rps19, rps12^a, (× 2), rps7 (×  2)

Subunits of RNA polymerase

rpoA, rpoB, rpoC1^a,, rpoC2

Photosynthesis

photosystem I

psaA, psaB, psaC, psaI, psaJ

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbG, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, lhbA

ATP synthase

atpA, atpB, atpE, atpF^a,, atpH, atpI

Large subunit Rubisco

rbcL

Cythochrome b/f complex

petA, petB^a,, petD, petG, petL, petN

NADH-dehydrogenase

ndhA^a,, ndhB^a, (× 2), ndhC, ndhD, ndhE, ndhG, ndhH, ndhI, ndhJ, ndhK

Other genes

Translation initiation factor

infA

Cytochrome c biogenesis

ccsA

ATP-dependent protease

clpP^b

Maturase

matK

Inner membrane protein

cemA

Acetyl-CoA carboxylase

accD

Genes of unknown function

Conserved hypothetical gene

orf42 (× 2), orf56 (× 2), orf188, ycf3^b, ycf4, ycf1, ycf2 (×  2), ycf15 (×  2), ycf68 (×  2)