Table 1 General features of Diaporthe genomes

Total genome size (bp)

57,864,239

57,558,510

63,685,968

56,108,228

64,714,568

58,328,132

Coverage (X)

270

ND

271

121

145

50

Number of contigs

10

20

34

47

985

28

Maximum contig length (bp)

14,464,108

8,755,198

12,370,252

6,293,594

1,124,325

7,711,659

N50 (bp)

8,708,519

5,171,887

5,472,022

2,479,481

204,364

3,550,333

GC content (%)

52.97

51.27

46.72

48.7

48.26

50.82

Complete BUSCO (%)

97.8

ND

98.5

97.93

98.21

97.9

Duplicated BUSCO (%)

0.6

ND

ND

3.33

ND

1

Fragmented BUSCO (%)

0.43

ND

ND

ND

ND

ND

Missing BUSCO (%)

1

ND

ND

ND

ND

1.1

Protein-coding gene number

18,385

14,425

15,921

13,754

16,606

12,393

Total gene length (bp)

23,421,216

23,205,508

26,007,773

ND

28,344,980

16,320,211

Average gene length (bp)

1690

1609

1633.5

ND

1709

1317

Protein-coding gene number (Augustus with D. caulivora)^a

18,385

15,675

15,113

13,717

15,232

15,655

Predicted secretome ^a

1501

1588

1383

1298

1535

1539

Predicted effectors > 80% probability^a

1598

1204

1088

1103

1229

1168

Cytoplasmic effectors^a

1448

1043

938

982

1073

1009

Apoplastic effectors^a

150

161

150

121

156

159

Genbank accesion no.

BioProject PRJNA717308

WNXA00000000

JACTAD000000000

JACAAM000000000

JUJX00000000

JACDXY000000000

References

this paper

[6]

[34]

[36]

[28]

[37]