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Table 3 Distribution of the thirteen Eru types (1–13) and the lambdoid (L) type in ten European BioProjects

From: High diversity in the regulatory region of Shiga toxin encoding bacteriophages

Bioproject

ID (NCBI)

Country

Source

No of samplesa

Stx

type

Eru type

     

L

1

2

3

4

5

6

7

8

9

10

11

12

13

PRJNA285020

Netherlands

Human

134

Stx1

 

5

3

  

30

1

 

2

     
    

Stx2

4

     

10

13

1

 

2

2

  

PRJEB6447

Norway

Human

97

               
    

Stx1

1

4

  

10

1

2

     

1

 
    

Stx2

1

12

1

   

6

14

  

2

 

2

1

PRJNA680568

Switzerland

Human

19

               
    

Stx1

              
    

Stx2

       

12

      

PRJNA694525

Switzerland

Dog/cat fodder

32

               
    

Stx1

 

2

  

8

         
    

Stx2

1

1

    

1

 

2

 

2

   

PRJNA438214

Switzerland

Human

18

               
    

Stx1

              
    

Stx2

       

15

      

PRJNA248042

England

Human

 > 3000

               
    

Stx1

37

3

  

3

      

1

 

1

    

Stx2

 

23

5

  

2

 

26

      

PRJNA70699

France

Human

8

               
    

Stx1

1

             
    

Stx2

      

1

2

      

PRJNA715185

Germany

Flour

56

               
    

Stx1

              
    

Stx2

         

5

    

PRJNA666781

Italy

Raw milk cheese

7

               
    

Stx1

       

4

      
    

Stx2

              

PRJNA643688

Portugal

Cattle

12

               
    

Stx1

1

     

3

1

      
    

Stx2

 

1

     

1

2

     

Total number sample of each Eru typeb

 

Stx1

40

14

3

0

21

31

6

5

2

5

0

1

1

1

    

Stx2

6

37

6

0

0

2

18

83

5

0

6

2

2

1

  1. a “No of samples” refer to the number of samples included in the different Bioprojects, however, only contigs containing both cI and stx were Eru typed
  2. bThe numbers of the more common types are indicated in bold in the bottom rows