Table 2 Differentially expressed mRNA isoforms from the 12 milk somatic cells from the 6 Holstein dairy cows with both gene and length previously annotateda
Feature ID | Position | Transcripts annotated | Transcript length | P-value | Fold change | FDRb |
|---|---|---|---|---|---|---|
ATF5 | 18:56269037–56,273,031 | 5 | 1193 | 3.68E-06 | − 1802.71 | 5.41E-03 |
ATXN1 | 23:40688295–40,829,586 | 6 | 2830 | 6.94E-07 | − 4394.88 | 2.12E-03 |
BTN1A1 | 23:31585190–31,591,478 | 6 | 2691 | 3.66E-05 | − 30.50 | 2.03E-02 |
CCL20 | 2:115948257–115,951,955 | 4 | 986 | 5.93E-05 | 81.84 | 2.86E-02 |
CCN2 | 9:69887188–69,890,613 | 5 | 2609 | 6.79E-06 | − 1718.78 | 8.11E-03 |
CCRL2 | 22:52998332–53,000,232 | 3 | 1344 | 7.06E-05 | 15.52 | 3.17E-02 |
CDC42BPB | 21:67623261–67,678,642 | 11 | 9648 | 1.07E-04 | − 371.82 | 4.09E-02 |
CSN1S2 | 6:85529904–85,548,556 | 6 | 1198 | 8.12E-05 | − 32.69 | 3.49E-02 |
CSN3 | 6:85645853–85,658,910 | 5 | 846 | 6.88E-05 | − 26.13 | 3.12E-02 |
CSN3 | 6:85648339–85,658,926 | 5 | 768 | 1.92E-05 | − 50.94 | 1.51E-02 |
CYLD | 18:19137683–19,199,449 | 8 | 2911 | 1.45E-05 | 475.25 | 1.28E-02 |
DHCR24 | 3:91411765–91,445,037 | 12 | 3354 | 3.29E-05 | − 650.78 | 1.91E-02 |
DNMBP | 26:20826581–20,942,446 | 9 | 4857 | 6.55E-05 | − 229.80 | 3.02E-02 |
DSP | 23:47824434–47,868,337 | 3 | 9482 | 1.32E-04 | − 31.07 | 4.49E-02 |
EFHD1 | 3:112396167–112,440,870 | 2 | 2513 | 6.47E-05 | − 20.79 | 2.99E-02 |
EFNB1 | X:81635594–81,648,094 | 3 | 2853 | 7.40E-05 | − 534.58 | 3.27E-02 |
ELF5 | 15:65019975–65,052,826 | 9 | 2021 | 1.33E-04 | − 49.35 | 4.49E-02 |
ELF5 | 15:65019975–65,065,633 | 9 | 1496 | 6.64E-07 | − 234.40 | 2.10E-03 |
ENSBTAG00000009049 | 5:57433436–57,437,847 | 2 | 2326 | 7.23E-05 | − 294.68 | 3.23E-02 |
EPB41L2 | 9:68956837–69,092,316 | 17 | 3068 | 1.30E-04 | − 377.19 | 4.49E-02 |
FCSK | 18:1644176–1,656,608 | 10 | 3249 | 1.38E-04 | − 495.38 | 4.58E-02 |
GLYCAM1 | 5:25478786–25,482,857 | 4 | 1806 | 2.13E-05 | − 40.39 | 1.59E-02 |
GPRC5B | 25:17478831–17,498,791 | 2 | 1321 | 8.84E-05 | − 49.93 | 3.68E-02 |
GSE1 | 18:11589111–11,644,469 | 9 | 3894 | 3.22E-05 | − 1110.95 | 1.90E-02 |
ITGB6 | 2:36153834–36,247,251 | 4 | 3394 | 1.59E-04 | − 631.00 | 4.94E-02 |
KIAA1522 | 2:120883699–120,890,243 | 10 | 3057 | 3.30E-06 | − 1170.47 | 5.34E-03 |
LENG8 | 18:62878870–62,888,679 | 2 | 5021 | 2.20E-06 | 447.30 | 4.13E-03 |
LHFPL2 | 10:9538340–9,585,771 | 3 | 1298 | 2.63E-05 | − 661.89 | 1.75E-02 |
LIMK2 | 17:70053292–70,092,008 | 12 | 1923 | 2.85E-06 | 401.17 | 4.83E-03 |
LPO | 19:9202919–9,247,946 | 6 | 4658 | 1.27E-04 | − 25.03 | 4.45E-02 |
LTBP2 | 10:85791791–85,897,975 | 16 | 5529 | 1.55E-05 | − 931.09 | 1.34E-02 |
LTF | 22:52952570–52,986,619 | 10 | 3112 | 3.11E-07 | − 1768.47 | 1.51E-03 |
MOB2 | 29:50016711–50,043,414 | 7 | 1775 | 1.01E-04 | − 258.89 | 3.97E-02 |
MPP5 | 10:79127656–79,234,049 | 11 | 2277 | 1.11E-04 | − 211.97 | 4.16E-02 |
MTSS2 | 18:1488985–1,508,027 | 4 | 2177 | 1.26E-04 | − 403.14 | 4.45E-02 |
NFIX | 7:12486829–12,549,125 | 8 | 1387 | 1.15E-06 | − 472.07 | 2.62E-03 |
NR3C2 | 17:9589541–10,018,758 | 3 | 2955 | 3.37E-05 | − 92.14 | 1.93E-02 |
NVL | 16:27418643–27,497,008 | 11 | 2559 | 4.01E-05 | 431.02 | 2.19E-02 |
PAH | 5:66613983–66,732,963 | 10 | 1311 | 1.07E-04 | − 134.03 | 4.09E-02 |
PCBP4 | 22:48973021–48,976,249 | 7 | 1212 | 1.58E-06 | − 1886.75 | 3.06E-03 |
PPARGC1A | 6:43380462–43,487,276 | 4 | 6323 | 8.79E-05 | − 483.42 | 3.67E-02 |
PRDM2 | 16:53788898–53,921,908 | 11 | 7161 | 3.57E-05 | − 174.89 | 2.01E-02 |
PRKAA2 | 3:89477898–89,549,744 | 2 | 1775 | 1.22E-04 | − 105.23 | 4.35E-02 |
PTPN14 | 16:69036393–69,223,539 | 6 | 3747 | 6.36E-05 | − 71.69 | 2.96E-02 |
RALGAPB | 13:67377907–67,449,822 | 2 | 4672 | 2.22E-05 | 351.92 | 1.61E-02 |
RASEF | 8:76173242–76,268,340 | 3 | 5985 | 7.85E-07 | − 253.98 | 2.22E-03 |
RBM27 | 7:57417457–57,475,132 | 14 | 3259 | 2.38E-05 | − 382.82 | 1.69E-02 |
RERE | 16:44907739–45,028,328 | 13 | 3729 | 1.47E-07 | − 7378.15 | 9.81E-04 |
REXO1 | 7:44150050–44,169,237 | 11 | 4370 | 5.96E-05 | − 505.26 | 2.86E-02 |
RGL2 | 23:7466041–7,472,417 | 11 | 2288 | 5.92E-06 | − 1232.16 | 7.36E-03 |
RPS8 | 3:101232559–101,235,265 | 5 | 1272 | 1.48E-05 | − 899.12 | 1.29E-02 |
SCAF11 | 5:34252702–34,303,160 | 8 | 5366 | 4.29E-06 | 961.74 | 6.03E-03 |
SFPQ | 3:110557887–110,571,478 | 6 | 2169 | 6.05E-06 | − 683.60 | 7.43E-03 |
SLC12A2 | 7:25761570–25,853,058 | 6 | 4094 | 3.69E-06 | − 295.71 | 5.41E-03 |
SLC25A36 | 1:128008637–128,042,419 | 13 | 2502 | 1.65E-09 | 1022.05 | 5.01E-05 |
SLC34A2 | 6:45185924–45,205,946 | 8 | 3949 | 4.76E-07 | − 4234.58 | 1.87E-03 |
SLC37A2 | 29:28495548–28,524,597 | 9 | 4117 | 1.04E-05 | 707.73 | 1.10E-02 |
TAF4 | 13:55097811–55,161,568 | 9 | 3084 | 1.43E-04 | − 167.37 | 4.67E-02 |
TBC1D24 | 25:1994690–2,006,139 | 11 | 4919 | 1.01E-04 | − 28.37 | 3.97E-02 |
TBKBP1 | 19:38748409–38,762,591 | 8 | 1806 | 1.20E-05 | − 849.58 | 1.19E-02 |
TDG | 5:67640209–67,651,517 | 14 | 1233 | 1.50E-06 | − 260.90 | 2.98E-03 |
TNRC18 | 25:38887201–38,970,458 | 13 | 11,628 | 6.69E-07 | − 564.99 | 2.10E-03 |
TNRC18 | 25:38887201–38,970,458 | 13 | 11,364 | 5.46E-05 | − 4688.21 | 2.71E-02 |
TULP4 | 9:94820215–94,960,850 | 8 | 4650 | 9.17E-07 | − 3074.10 | 2.28E-03 |
WAS | X:86765549–86,772,520 | 11 | 1518 | 4.91E-05 | − 161.16 | 2.48E-02 |
ZBTB42 | 21:69255817–69,256,846 | 3 | 1029 | 3.37E-05 | − 682.55 | 1.93E-02 |
ZDHHC24 | 29:44577772–44,584,122 | 3 | 1128 | 3.69E-05 | − 238.07 | 2.04E-02 |
ZNF750 | 19:49854333–49,863,765 | 2 | 3751 | 5.78E-05 | − 33.30 | 2.84E-02 |