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Fig. 5 | BMC Genomics

Fig. 5

From: Salmonella enterica subsp. enterica Welikade: guideline for phylogenetic analysis of serovars rarely involved in foodborne outbreaks

Fig. 5

Boxplot representing the average SNP distance calculated as a function of the reference genome used and accounting or not for recombination events. a inter-comparison of SNP distance average between lineages or clades. b intra-comparison of SNP distance average inside clusters. Two conditions were compared: SNP and SNP + CFML. SNP: SNP analysis using the iVARCall2 tool; SNP + CFML: SNP analysis using iVARCall2 and a ClonalFrameML analysis. Three reference genomes were compared: Gaminara SA200663285, Gaminara CFSAN070644, and Typhimurium LT2

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BMC Genomics

ISSN: 1471-2164

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