Table 2 Gene duplication events identified and Ka, Ks and Ka/Ks analysis in PYL gene family
Species names | Duplicated modes | Duplicate gene 1 | Duplicate gene 2 | Ka | Ks | Ka/Ks | P-Value |
|---|---|---|---|---|---|---|---|
Fragaria vesca | WGD | FvH4_7g16220.1 | FvH4_7g31130.1 | 0.111809 | 3.47965 | 0.0321323 | 2.44E-67 |
TD | FvH4_3g07710.1 | FvH4_3g07720.1 | 0.165144 | 1.18186 | 0.139732 | 9.47E-16 | |
TRD | FvH4_3g16470.1 | FvH4_7g31130.1 | 0.0191826 | 1.0173994 | 0.0188545423 | 0.714904 | |
DSD | FvH4_2g32040.1 | FvH4_5g22060.1 | 0.344001 | 3.50477 | 0.0981522 | 6.13E-29 | |
FvH4_3g07710.1 | FvH4_7g25180.1 | 0.341964 | 3.3568 | 0.101872 | 0 | ||
FvH4_3g07720.1 | FvH4_6g10740.1 | 0.471614 | 3.64497 | 0.129388 | 0 | ||
FvH4_5g22060.1 | FvH4_6g10740.1 | 0.425737 | 3.4844 | 0.122184 | 0 | ||
FvH4_6g10740.1 | FvH4_7g25180.1 | 0.216804 | 3.4798 | 0.0623035 | 2.18E-56 | ||
FvH4_7g16220.1 | FvH4_7g25180.1 | 0.376761 | 3.50493 | 0.107495 | 0 | ||
FvH4_7g31130.1 | FvH4_6g10740.1 | 0.514944 | 3.70463 | 0.139 | 2.75E-35 | ||
Malus domestica | WGD | MD01G1078900 | MD01G1216100 | 0.11464 | 3.5566 | 0.032233 | 4.33E-47 |
MD01G1158500 | MD07G1227100 | 0.0268639 | 0.314949 | 0.085296 | 2.40E-14 | ||
MD01G1216100 | MD07G1286000 | 0.0115856 | 0.133633 | 0.0866976 | 5.77E-08 | ||
MD01G1078900 | MD07G1147700 | 0.0116527 | 0.204397 | 0.0570102 | 5.83E-11 | ||
MD01G1078900 | MD07G1286000 | 0.109027 | 3.94655 | 0.0276258 | 1.02E-45 | ||
MD01G1216100 | MD07G1147700 | 0.106375 | 3.57085 | 0.0297899 | 4.11E-47 | ||
MD04G1165000 | MD12G1178800 | 0.0815507 | 0.404153 | 0.201782 | 9.88E-12 | ||
MD06G1034000 | MD16G1274400 | 0.0388825 | 0.40891 | 0.0950881 | 1.04E-14 | ||
MD07G1147700 | MD07G1286000 | 0.103343 | 2.90561 | 0.0355667 | 3.77E-45 | ||
MD07G1227100 | MD12G1178800 | 0.204621 | 3.1111 | 0.0657712 | 9.49E-30 | ||
MD08G1043500 | MD15G1060800 | 0.0463626 | 0.135679 | 0.341708 | 0.00562685 | ||
DSD | MD01G1078900 | MD07G1227100 | 0.379574 | 3.53939 | 0.107243 | 5.31E-39 | |
MD01G1158500 | MD04G1165000 | 0.203633 | 3.56206 | 0.0571672 | 2.27E-37 | ||
MD01G1216100 | MD04G1165000 | 0.452985 | 3.6647 | 0.123608 | 3.47E-37 | ||
MD04G1165000 | MD07G1227100 | 0.190499 | 3.52175 | 0.0540923 | 1.83E-33 | ||
MD05G1300200 | MD07G1227100 | 0.34931 | 3.51504 | 0.0993757 | 5.12E-38 | ||
MD06G1034000 | MD08G1043500 | 0.350207 | 3.51566 | 0.0996134 | 0 | ||
MD07G1147700 | MD04G1165000 | 0.389925 | 3.52186 | 0.110716 | 2.95E-31 | ||
MD08G1043500 | MD16G1274400 | 0.33648 | 3.49283 | 0.0963343 | 0 | ||
MD15G1060800 | MD16G1274400 | 0.347433 | 3.541 | 0.0981174 | 8.11E-43 | ||
MD16G1274400 | MD07G1227100 | 0.416881 | 3.51859 | 0.11848 | 1.07E-40 | ||
Prunus avium | WGD | Pav_sc0000591.1_g120.1.mk | Pav_sc0001335.1_g500.1.mk | 0.111293 | 3.47319 | 0.0320435 | 1.63E-53 |
Pav_sc0000057.1_g050.1.mk | Pav_sc0001341.1_g250.1.mk | 0.206769 | 3.45147 | 0.0599077 | 4.40E-42 | ||
DSD | Pav_sc0000037.1_g470.1.mk | Pav_sc0001341.1_g250.1.mk | 0.338981 | 3.35285 | 0.101102 | 3.39E-29 | |
Pav_sc0000057.1_g050.1.mk | Pav_sc0004290.1_g030.1.mk | 0.427881 | 3.4789 | 0.122993 | 0 | ||
Pav_sc0000591.1_g120.1.mk | Pav_sc0001341.1_g250.1.mk | 0.384841 | 3.48093 | 0.110557 | 5.31E-29 | ||
Pav_sc0001335.1_g500.1.mk | Pav_sc0001341.1_g250.1.mk | 0.412724 | 3.52279 | 0.117158 | 0 | ||
Pav_sc0001341.1_g250.1.mk | Pav_sc0004290.1_g030.1.mk | 0.418773 | 3.45463 | 0.121221 | 1.32E-25 | ||
Pyrus bretschneideri | WGD | Pbr027457.1 | Pbr013616.1 | 0.119033 | 3.57341 | 0.0333107 | 1.31E-44 |
Pbr013616.1 | Pbr010794.1 | 0.0157776 | 0.154226 | 0.102302 | 5.42E-08 | ||
Pbr027457.1 | Pbr010794.1 | 0.11267 | 3.57425 | 0.0315229 | 2.57E-52 | ||
Pbr016128.1 | Pbr000497.1 | 0.0796357 | 0.14881 | 0.535151 | 0.0896506 | ||
Pbr028222.1 | Pbr019415.1 | 0.0610577 | 0.46577 | 0.13109 | 1.79E-15 | ||
Pbr019827.1 | Pbr036422.1 | 0.0417345 | 0.113073 | 0.369095 | 0.0074364 | ||
TRD | Pbr042468.1 | Pbr036422.1 | 0.348505 | 3.50604 | 0.0994014 | 0 | |
DSD | Pbr000497.1 | Pbr028222.1 | 0.422075 | 3.58091 | 0.117868 | 3.81E-26 | |
Pbr009570.1 | Pbr019415.1 | 0.201551 | 3.53735 | 0.056978 | 4.32E-43 | ||
Pbr010794.1 | Pbr019415.1 | 0.522478 | 3.65444 | 0.142971 | 1.25E-36 | ||
Pbr013616.1 | Pbr019415.1 | 0.480095 | 3.65137 | 0.131483 | 5.60E-31 | ||
Pbr016128.1 | Pbr009570.1 | 0.345165 | 3.50627 | 0.0984424 | 8.68E-36 | ||
Pbr019415.1 | Pbr042468.1 | 0.385776 | 3.51598 | 0.109721 | 2.49E-37 | ||
Pbr019827.1 | Pbr042468.1 | 0.34476 | 3.50929 | 0.0982423 | 0 | ||
Pbr027457.1 | Pbr009570.1 | 0.376167 | 3.51597 | 0.106988 | 2.43E-37 | ||
Pbr028222.1 | Pbr042468.1 | 0.387427 | 3.52701 | 0.109846 | 2.84E-44 | ||
Pbr036422.1 | Pbr009570.1 | 0.392733 | 3.53164 | 0.111204 | 4.54E-24 | ||
Pyrus communis | WGD | pycom01g10720 | pycom07g14670 | 0.0244846 | 0.16692 | 0.146685 | 9.06E-08 |
pycom12g16880 | pycom04g14710 | 0.0796933 | 0.362637 | 0.21976 | 3.32E-10 | ||
pycom16g24460 | pycom06g02810 | 0.0364341 | 0.429431 | 0.0848428 | 3.92E-15 | ||
DSD | pycom01g10720 | pycom07g20570 | 0.401604 | 3.53454 | 0.113622 | 6.03E-37 | |
pycom04g14710 | pycom07g20570 | 0.236098 | 3.51749 | 0.0671212 | 5.83E-29 | ||
pycom06g02810 | pycom07g20570 | 0.427578 | 3.526 | 0.121264 | 2.32E-37 | ||
pycom07g14670 | pycom07g20570 | 0.430594 | 3.50067 | 0.123003 | 1.81E-36 | ||
pycom07g20570 | pycom12g16880 | 0.217137 | 3.00525 | 0.0722526 | 6.48E-30 | ||
pycom12g16880 | pycom16g24460 | 0.400614 | 3.5472 | 0.112938 | 2.42E-38 | ||
Prunus mume | WGD | Pm018396 | Pm019775 | 0.111453 | 3.47718 | 0.0320528 | 1.07E-55 |
DSD | Pm002844 | Pm018987 | 0.211125 | 3.46082 | 0.0610044 | 1.70E-38 | |
Pm005489 | Pm023250 | 0.337261 | 3.5912 | 0.0939129 | 3.91E-44 | ||
Pm010233 | Pm018987 | 0.303213 | 3.28914 | 0.092186 | 0 | ||
Pm018396 | Pm018987 | 0.366869 | 3.45993 | 0.106034 | 0 | ||
Pm018987 | Pm023250 | 0.423619 | 3.43084 | 0.123474 | 0 | ||
Pm019775 | Pm018987 | 0.42043 | 3.61373 | 0.116342 | 1.06E-42 | ||
Prunus persica | WGD | Prupe.2G185800.1 | Prupe.2G308200.1 | 0.110113 | 3.58704 | 0.0306975 | 2.88E-52 |
DSD | Prupe.1G413500.1 | Prupe.5G036800.1 | 0.350907 | 3.56861 | 0.0983314 | 2.98E-41 | |
Prupe.2G185800.1 | Prupe.2G256700.1 | 0.371103 | 3.44492 | 0.107725 | 0 | ||
Prupe.2G256700.1 | Prupe.6G284000.1 | 0.213853 | 3.4239 | 0.062459 | 1.50E-40 | ||
Prupe.2G308200.1 | Prupe.6G284000.1 | 0.401603 | 3.54339 | 0.113339 | 0 | ||
Prupe.4G062100.1 | Prupe.6G284000.1 | 0.389699 | 3.47765 | 0.112058 | 1.04E-22 | ||
Prupe.5G036800.1 | Prupe.2G256700.1 | 0.42 | 3.4189 | 0.122847 | 0 | ||
Rubus occidentalis | WGD | Ro07_G18701 | Ro07_G34681 | 0.101014 | 3.49716 | 0.0288844 | 2.92E-50 |
TD | Ro03_G05255 | Ro03_G05254 | 0.121703 | 1.65984 | 0.0733222 | 3.83E-22 | |
DSD | Ro02_G04464 | Ro05_G07357 | 0.355936 | 3.46687 | 0.102668 | 8.77E-32 | |
Ro03_G05254 | Ro07_G04754 | 0.302499 | 3.42801 | 0.0882432 | 1.57E-41 | ||
Ro03_G05255 | Ro07_G04754 | 0.33339 | 3.44744 | 0.0967064 | 2.86E-36 | ||
Ro05_G07357 | Ro06_G05644 | 0.399903 | 3.4264 | 0.116712 | 4.02E-28 | ||
Ro06_G05644 | Ro07_G04754 | 0.31105 | 3.54625 | 0.0877124 | 9.65E-27 | ||
Ro07_G04754 | Ro07_G18701 | 0.356946 | 3.48012 | 0.102567 | 4.36E-41 | ||
Ro07_G34681 | Ro07_G04754 | 0.439223 | 3.51407 | 0.12499 | 0 |