Fig. 3
From: Context-dependent DNA polymerization effects can masquerade as DNA modification signals
Consistency of IPDs between WGA and native samples for extended motifs. Similarly to Fig. 2, Figure A-E show motifs that have one or more bases with extremely high IPD. Figure A, B, and C show motif examples in non-B DNA. (GGN)4 in A may form G-quadruplexes that are associated with polymerization slowdown. AT(CAG)(CTG) in B and (TGAC)(GTCA) in C have quasi-palindromes that are pairs of reverse-complementary sequences in parentheses and might induce cruciform DNA structures associated with polymerization acceleration. Figure D and E show motifs with extreme IPDs at cytosines