Table 2 Counts of differentially and uniquely expressed small RNAs for each tissue pairwise comparison
From: Abundant small RNAs in the reproductive tissues and eggs of the honey bee, Apis mellifera
Tissue comparison | tRFs (24,899 total) | miRNAs (651 total) | piRNAs (2,575,432 total) | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
Tissue 1 | Tissue 2 | # of DE tRFs | Up in T1 or T2 | Unique in T1, or T2 | # of DE miRNAs | Up in T1 or T2 | Unique in T1, or T2 | # of DE piRNAs | Up in T1 or T2 | Unique in T1, or T2 |
Eggs from worker cells (virgin queen) | Eggs from drone cells (virgin queen) | 0 | 0 | 0 | 0 | 0 | 0 | 107 | 107, 0 | 67, 0 |
Fertilised eggs | Unfertilised eggs | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0, 0 | 0, 0 |
Virgin queen eggs (all) | Mated queen eggs (all) | 39 | 35, 4 | 21, 2 | 28 | 25, 3 | 7, 0 | 3586 | 2501, 1085 | 1681, 468 |
24 h testes | 72 h testes | 139 | 0, 139 | 0, 89 | 13 | 2, 11 | 0, 0 | 610 | 11, 599 | 4, 519 |
72 h testes | 144 h testes | 140 | 140, 0 | 101, 0 | 2 | 2, 0 | 0, 0 | 115 | 114, 1 | 58,0 |
24 h testes | 144 h testes | 0 | 0, 0 | 0, 0 | 14 | 2, 12 | 1, 0 | 199 | 97, 102 | 52, 71 |
Semen | Spermathecal contents | 99 | 63, 36 | 12, 12 | 62 | 35, 27 | 8, 6 | 3869 | 509, 3360 | 303, 3005 |
Semen | Testes (pooled) | 847 | 809, 38 | 508,21 | 94 | 52, 42 | 22, 8 | 2779 | 2183, 596 | 1639, 426 |
Semen | Ovaries | 548 | 515, 33 | 370,23 | 86 | 48, 38 | 22, 8 | 12,508 | 2650, 9858 | 1864, 9505 |
Semen | Virgin queen eggs (all) | 591 | 542, 49 | 358, 37 | 102 | 63, 39 | 19, 8 | 12,399 | 3232, 9167 | 2409, 8802 |
Semen | Mated queen eggs (all) | 812 | 755, 57 | 635, 45 | 110 | 70, 40 | 35, 5 | 12,113 | 3819, 8294 | 3302, 7948 |
Spermatheca | Testes (pooled) | 692 | 644, 48 | 437,9 | 112 | 76, 36 | 28, 6 | 15,877 | 15,041, 836 | 13,736, 493 |
Spermatheca | Ovaries | 265 | 235, 30 | 175,6 | 93 | 53, 40 | 18, 2 | 6799 | 4069, 2730 | 2299, 851 |
Spermatheca | Virgin queen eggs (all) | 501 | 445, 56 | 310,16 | 107 | 68, 39 | 36, 8 | 10,397 | 6168, 4229 | 4178, 2058 |
Spermatheca | Mated queen eggs (all) | 678 | 621, 57 | 522, 20 | 131 | 91, 40 | 53, 5 | 11,193 | 7291, 3902 | 5887, 1747 |
Testes (pooled) | Ovaries | 162 | 76, 86 | 37, 58 | 102 | 59, 43 | 16, 10 | 44,051 | 5527, 38,524 | 3387, 36,964 |
Testes (pooled) | Virgin queen eggs (all) | 404 | 211, 193 | 110, 127 | 121 | 75, 46 | 22, 7 | 42,757 | 7298, 35,459 | 5195, 33,897 |
Testes (pooled) | Mated queen eggs (all) | 449 | 334, 115 | 242, 92 | 128 | 90, 38 | 47, 4 | 39,533 | 8079, 31,454 | 6604, 30,077 |
Ovaries | Virgin queen eggs (all) | 76 | 38, 38 | 25, 33 | 16 | 12, 4 | 2, 0 | 4131 | 2592, 1539 | 1315, 778 |
Ovaries | Mated queen eggs (all) | 106 | 69, 37 | 53, 36 | 44 | 35, 9 | 14, 2 | 4234 | 3420, 814 | 1725, 182 |