Table 3 Real vs Predicted TAD boundaries in human ES cells across all chromosomes
From: ProbC: joint modeling of epigenome and transcriptome effects in 3D genome
| Â | Resolution | |||
|---|---|---|---|---|
Metrics | 1 kb | 5 kb | 40 kb | 100 kb |
True Positives | 10,245 | 13,452 | 12,546 | 4,724 |
True Positive Rate | 12.31% | 27.59% | 62.31% | 69.83% |
False Negatives | 72,779 | 35,304 | 7588 | 2,042 |
False Negative Rate | 87.69% | 72.41% | 37.69% | 30.17% |
False Positives | 41,123 | 21,134 | 6,020 | 672 |
Predicted TAD Boundaries | 51,368 | 34,586 | 18,566 | 5,396 |
True TAD Boundaries | 83,204 | 48,756 | 20,134 | 6,766 |