Table 3 Analysis of QTLs for 35 traits
Trait | QTL | Chromsome | Left Marker | Right Marker | LeftCI (cM) | RightCI (cM) | Start | End | LOD | PVE(%) | Add | Dom |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
PH1 | qPH1-A13 | A13 | bin395 | bin396 | 248.5 | 252.5 | 107,859,745 | 108,097,137 | 3.16 | 6.89 | -1.09 | -0.8 |
PH1 | qPH1-D05 | D05 | bin223 | bin229 | 155.5 | 167.5 | 39,478,283 | 41,627,412 | 3 | 6.47 | -1.21 | 0.7 |
CNH | qCNH-A07 | A07 | bin3 | bin4 | 0 | 6.5 | 330,907 | 915,621 | 3.37 | 6.65 | -0.32 | 0.51 |
CNH | qCNH-A12 | A12 | bin454 | bin455 | 181.5 | 186.5 | 104,326,658 | 104,861,614 | 3.95 | 8.35 | 0.5 | -0.1 |
FTLH | qFTLH-A04 | A04 | bin2 | bin3 | 2.5 | 6.5 | 295,380 | 912,894 | 2.98 | 6.3 | -0.49 | -1.1 |
STLH | qSTLH-A13 | A13 | bin393 | bin394 | 245.5 | 248.5 | 107,403,460 | 107,859,745 | 3.02 | 4.86 | -0.98 | -0.25 |
STLH | qSTLH-D01 | D01 | bin57 | bin58 | 51.5 | 54.5 | 10,754,698 | 11,063,172 | 3.04 | 4.93 | 1.09 | -0.06 |
STLH | qSTLH-D05-1 | D05 | bin221 | bin227 | 151.5 | 154.5 | 52,507,478 | 52,707,478 | 2.98 | 4.55 | -0.55 | 1.2 |
STLH | qSTLH-D05-2 | D05 | bin250 | bin251 | 173.5 | 174.5 | 38,370,762 | 40,442,855 | 3.22 | 5.01 | -0.63 | 1.21 |
D1 | qD1-A01 | A01 | bin58 | bin59 | 53.5 | 55.5 | 12,558,163 | 13,053,104 | 2.75 | 5.62 | 0.68 | 0.13 |
D1 | qD1-A04 | A04 | bin2 | bin3 | 1.5 | 5.5 | 295,380 | 912,894 | 3.44 | 7.18 | -0.25 | -1.02 |
D2 | qD2-A11 | A11 | bin7 | bin55 | 29.5 | 48.5 | 807,428 | 9,258,460 | 3.68 | 4.46 | -1.3 | -1.28 |
SLA | qSLA-A09 | A09 | bin176 | bin177 | 103.5 | 105.5 | 63,066,211 | 63,735,059 | 2.62 | 7.16 | 0.38 | 3.73 |
SPn | qSPn-D05 | D05 | bin59 | bin60 | 43.5 | 44.5 | 8,567,785 | 8,789,652 | 4.35 | 7.56 | 1.6 | 0.01 |
SPn | qSPn-D06 | D06 | bin6 | bin7 | 0 | 1.5 | 617,114 | 818,140 | 2.87 | 4.89 | 0.28 | -1.78 |
SPn | qSPn-D12 | D12 | bin138 | bin139 | 107.5 | 110.5 | 47,167,180 | 47,756,249 | 3.31 | 5.69 | -0.01 | 1.87 |
SPn | qSPn-D13 | D13 | bin209 | bin211 | 135.5 | 139.5 | 61,357,809 | 61,953,285 | 3.24 | 5.37 | -1.2 | 0.71 |
TPn | qTPn-A01 | A01 | bin48 | bin49 | 43.5 | 51.5 | 9,757,023 | 10,168,632 | 2.56 | 5 | -0.62 | 1.4 |
TPn | qTPn-A06 | A06 | bin40 | bin41 | 43.5 | 44.5 | 8,721,887 | 9,167,458 | 3.33 | 6.91 | -0.12 | -1.88 |
TPn | qTPn-D12 | D12 | bin187 | bin188 | 148.5 | 149.5 | 55,359,867 | 55,595,846 | 3.33 | 7.03 | 0.07 | 1.92 |
SCi | qSCi-A01 | A01 | bin43 | bin44 | 42.5 | 45.5 | 8,036,084 | 8,969,646 | 2.63 | 4.43 | 6.78 | 18.33 |
SCi | qSCi-A04 | A04 | bin182 | bin183 | 145.5 | 146.5 | 57,244,810 | 57,548,850 | 2.78 | 5.03 | 1.72 | -22.14 |
SCi | qSCi-D04-1 | D04 | bin32 | bin33 | 28.5 | 32.5 | 4,450,078 | 4,794,145 | 3.19 | 5.67 | -7.03 | 21.69 |
SCi | qSCi-D04-2 | D04 | bin131 | bin132 | 86.5 | 88.5 | 46,227,657 | 47,544,347 | 2.94 | 4.94 | -4.56 | -20.82 |
SCi | qSCi-D13 | D13 | bin208 | bin209 | 135.5 | 139.5 | 61,187,337 | 61,554,710 | 2.5 | 4.3 | -14.5 | 1.89 |
TCi | qTCi-A04 | A04 | bin103 | bin104 | 101.5 | 103.5 | 33,378,346 | 33,609,608 | 3.23 | 3.33 | -3.67 | -23.45 |
TCi | qTCi-A11 | A11 | bin7 | bin55 | 14.5 | 53.5 | 807,428 | 9,258,460 | 2.75 | 12.52 | -21.49 | 36.36 |
TCi | qTCi-D04-1 | D04 | bin32 | bin33 | 28.5 | 32.5 | 4,450,078 | 4,794,145 | 2.86 | 2.95 | -2.41 | 22.13 |
TCi | qTCi-D04-2 | D04 | bin131 | bin132 | 86.5 | 88.5 | 46,227,657 | 47,544,347 | 3.32 | 3.21 | -5.82 | -21.48 |
SCond | qSCond-A10 | A10 | bin352 | bin353 | 196.5 | 202.5 | 109,106,699 | 109,336,022 | 2.5 | 3.91 | 0.02 | 0.02 |
SCond | qSCond-A12 | A12 | bin423 | bin425 | 158.5 | 159.5 | 98,555,400 | 99,115,052 | 3.91 | 6.42 | 0.03 | -0.01 |
SCond | qSCond-D04 | D04 | bin142 | bin143 | 88.5 | 94.5 | 50,189,434 | 50,421,587 | 2.59 | 4.03 | -0.01 | -0.03 |
SCond | qSCond-D05 | D05 | bin51 | bin52 | 39.5 | 40.5 | 7,536,477 | 7,742,595 | 5.19 | 8.67 | 0.03 | -0.01 |
SCond | qSCond-D06 | D06 | bin6 | bin7 | 0 | 1.5 | 617,114 | 818,140 | 2.9 | 4.74 | 0.01 | -0.04 |
SCond | qSCond-D13 | D13 | bin196 | bin197 | 121.5 | 123.5 | 59,385,048 | 59,708,159 | 3.57 | 5.9 | -0.03 | 0.01 |
TCond | qTCond-A12 | A12 | bin427 | bin430 | 157.5 | 164.5 | 99,337,542 | 100,288,635 | 2.53 | 4.62 | 0.03 | -0.02 |
TCond | qTCond-D04-1 | D04 | bin128 | bin129 | 81.5 | 85.5 | 45,564,063 | 45,808,186 | 3.42 | 6.18 | -0.01 | -0.04 |
TCond | qTCond-D04-2 | D04 | bin131 | bin132 | 86.5 | 87.5 | 46,227,657 | 47,544,347 | 3.62 | 6.52 | -0.02 | -0.04 |
STr | qSTr-A05 | A05 | bin119 | bin120 | 95.5 | 103.5 | 20,625,360 | 21,148,783 | 2.82 | 3.3 | 0.58 | 1.03 |
STr | qSTr-A07 | A07 | bin285 | bin286 | 141.5 | 145.5 | 88,546,004 | 88,983,661 | 2.84 | 3.3 | 0.76 | -0.67 |
STr | qSTr-A10 | A10 | bin228 | bin229 | 120.5 | 124.5 | 77,749,540 | 78,563,787 | 2.8 | 3.29 | 0.95 | 0.07 |
STr | qSTr-A12 | A12 | bin7 | bin8 | 8.5 | 19.5 | 1,418,415 | 1,932,428 | 2.53 | 2.96 | 0.51 | -0.89 |
STr | qSTr-D02 | D02 | bin66 | bin63 | 55.5 | 59.5 | 11,571,331 | 11,240,351 | 3.8 | 4.38 | -0.55 | -1.17 |
STr | qSTr-D04 | D04 | bin23 | bin24 | 16.5 | 18.5 | 2,781,571 | 3,052,412 | 2.77 | 3.34 | -0.49 | 1.02 |
STr | qSTr-D05 | D05 | bin51 | bin52 | 39.5 | 40.5 | 7,536,477 | 7,742,595 | 4.89 | 6.12 | 1.23 | -0.11 |
STr | qSTr-D06 | D06 | bin6 | bin7 | 0 | 1.5 | 617,114 | 818,140 | 3.74 | 4.63 | 0.15 | -1.49 |
STr | qSTr-D10 | D10 | bin7 | bin8 | 9.5 | 15.5 | 1,651,964 | 1,902,901 | 2.86 | 3.32 | -0.91 | -0.05 |
STr | qSTr-D13 | D13 | bin196 | bin197 | 121.5 | 123.5 | 59,385,048 | 59,708,159 | 2.79 | 3.45 | -0.87 | 0.11 |
TTr | qTTr-A12 | A12 | bin8 | bin9 | 12.5 | 21.5 | 1,656,702 | 2,140,812 | 3.56 | 6.6 | 0.69 | -1.07 |
Chl a | qChl a-A13-1 | A13 | bin270 | bin278 | 145.5 | 159.5 | 85,560,449 | 86,656,939 | 2.73 | 4.64 | -0.04 | -0.03 |
Chl a | qChl a-A13-2 | A13 | bin286 | bin287 | 173.5 | 184.5 | 80,629,132 | 83,806,916 | 2.69 | 5.21 | -0.04 | -0.01 |
Chl a | qChl a-D01 | D01 | bin239 | bin240 | 136.5 | 146.5 | 62,926,804 | 63,199,901 | 3.05 | 5.09 | -0.02 | 0.05 |
Chl a | qChl a-D03 | D03 | bin153 | bin154 | 114.5 | 119.5 | 48,191,318 | 48,417,933 | 4.2 | 7.97 | 0 | 0.07 |
Chl a | qChl a-D09 | D09 | bin213 | bin214 | 158.5 | 160.5 | 47,673,829 | 48,167,059 | 2.53 | 4.43 | -0.04 | 0 |
Chl b | qChl b-A13 | A13 | bin289 | bin290 | 173.5 | 184.5 | 87,115,053 | 87,473,165 | 2.7 | 5.01 | -0.01 | -0.01 |
Chl b | qChl b-D01 | D01 | bin239 | bin240 | 136.5 | 146.5 | 62,926,804 | 63,199,901 | 2.79 | 5.22 | -0.01 | 0.02 |
Chl b | qChl b-D02 | D02 | bin252 | bin253 | 145.5 | 153.5 | 62,524,672 | 62,831,343 | 2.53 | 4.78 | -0.01 | 0.02 |
Chl b | qChl b-D03 | D03 | bin153 | bin154 | 114.5 | 119.5 | 48,191,318 | 48,417,933 | 3.97 | 8.1 | -0.01 | 0.02 |
Car | qCar-A12 | A12 | bin314 | bin315 | 89.5 | 93.5 | 76,853,357 | 77,247,271 | 2.84 | 5.57 | 0 | 0.01 |
Car | qCar-D03 | D03 | bin153 | bin154 | 114.5 | 119.5 | 48,191,318 | 48,417,933 | 2.92 | 6.46 | 0 | 0.01 |
Chl a/b | qChl a/b-D05 | D05 | bin276 | bin277 | 184.5 | 194.5 | 57,297,699 | 57,671,573 | 2.9 | 6.81 | -0.05 | -0.05 |
Chl a/b | qChl a/b-D06 | D06 | bin228 | bin229 | 123.5 | 125.5 | 59,098,820 | 59,707,362 | 2.82 | 6.74 | -0.05 | 0.04 |
Chl a/b | qChl a/b-D12 | D12 | bin172 | bin173 | 125.5 | 138.5 | 52,342,567 | 53,232,613 | 2.56 | 6.27 | -0.05 | 0.05 |
Total Chl | qTotal Chl-A13 | A13 | bin48 | bin49 | 47.5 | 49.5 | 5,904,987 | 6,263,087 | 2.51 | 4.46 | -0.05 | -0.01 |
Total Chl | qTotal Chl-D01 | D01 | bin238 | bin239 | 136.5 | 147.5 | 62,826,804 | 63,033,940 | 2.67 | 4.49 | -0.03 | 0.06 |
Total Chl | qTotal Chl-D03 | D03 | bin153 | bin154 | 114.5 | 118.5 | 48,191,318 | 48,417,933 | 4.99 | 9.49 | -0.02 | 0.1 |
PH2 | qPH2-A11 | A11 | bin414 | bin439 | 258.5 | 264.5 | 92,237,505 | 97,642,814 | 2.66 | 4.32 | 0.32 | -15.33 |
PH2 | qPH2-D01 | D01 | bin209 | bin210 | 111.5 | 117.5 | 59,207,021 | 59,470,354 | 2.73 | 4.04 | 7.05 | 10.07 |
PH2 | qPH2-D03 | D03 | bin153 | bin154 | 114.5 | 119.5 | 48,191,318 | 48,417,933 | 4.06 | 6.47 | -13.14 | -0.61 |
PH2 | qPH2-D06 | D06 | bin59 | bin60 | 60.5 | 66.5 | 7,355,757 | 7,642,365 | 2.66 | 3.94 | 9.93 | 4.05 |
PH2 | qPH2-D09 | D09 | bin215 | bin216 | 158.5 | 165.5 | 48,167,059 | 48,412,567 | 2.54 | 3.77 | 4.15 | 11.91 |
PH2 | qPH2-D12 | D12 | bin221 | bin222 | 189.5 | 192.5 | 60,587,231 | 60,897,033 | 4.86 | 7.87 | 14.21 | -1.36 |
FBN | qFBN-A04 | A04 | bin39 | bin40 | 58.5 | 71.5 | 7,802,365 | 8,134,366 | 2.64 | 3.82 | 1.13 | -0.96 |
FBN | qFBN-A05 | A05 | bin44 | bin45 | 34.5 | 35.5 | 7,019,176 | 7,291,976 | 3.58 | 5.29 | 0.47 | -1.89 |
FBN | qFBN-A06 | A06 | bin22 | bin23 | 26.5 | 35.5 | 3,658,624 | 4,677,844 | 3.97 | 6.64 | 0.23 | -2.18 |
FBN | qFBN-D04 | D04 | bin51 | bin52 | 45.5 | 48.5 | 7,626,894 | 7,826,894 | 2.8 | 3.88 | 0.72 | -1.34 |
FBN | qFBN-D11 | D11 | bin89 | bin90 | 73.5 | 75.5 | 14,642,790 | 15,006,002 | 3.44 | 5.2 | -0.37 | -1.83 |
FBN | qFBN-D12 | D12 | bin106 | bin107 | 77.5 | 78.5 | 41,087,553 | 41,476,816 | 3.4 | 5.05 | -1.33 | 0.37 |
BN | qBN-D05 | D05 | bin104 | bin105 | 70.5 | 76.5 | 15,695,738 | 16,137,583 | 2.55 | 4.66 | -2.13 | -2.04 |
BN | qBN-D10 | D10 | bin11 | bin22 | 19.5 | 43.5 | 2,290,240 | 4,417,087 | 2.85 | 5.34 | 2.58 | 1.96 |
SCY | qSCY-D07 | D07 | bin231 | bin232 | 188.5 | 189 | 57,783,341 | 58,417,178 | 2.53 | 5.54 | 1.92 | 12.2 |
SCY | qSCY-D10 | D10 | bin22 | bin21 | 21.5 | 45.5 | 4,200,666 | 4,417,087 | 2.67 | 5.85 | 8.64 | 7.69 |
LY | qLY-D07 | D07 | bin231 | bin232 | 188.5 | 189 | 57,783,341 | 58,417,178 | 2.64 | 6.04 | 0.74 | 3.6 |
BW | qBW-A10 | A10 | bin57 | bin58 | 48.5 | 52.5 | 10,608,267 | 10,844,347 | 3.55 | 7.6 | -0.32 | -0.22 |
SI | qSI-D01 | D01 | bin101 | bin103 | 73.5 | 74.5 | 19,943,730 | 21,931,208 | 2.68 | 6.14 | 0.05 | 0.91 |
SI | qSI-D05 | D05 | bin10 | bin11 | 8.5 | 10.5 | 2,123,451 | 2,323,451 | 3.7 | 8.56 | 0.8 | 0.13 |
LP | qLP-A07 | A07 | bin107 | bin108 | 83.5 | 87.5 | 19,417,639 | 19,813,491 | 2.66 | 4.84 | -0.56 | -2.13 |
LP | qLP-D09 | D09 | bin221 | bin222 | 164.5 | 165.5 | 49,209,126 | 49,409,127 | 3.48 | 6.77 | -1.94 | -0.37 |
LP | qLP-D10 | D10 | bin22 | bin21 | 36.5 | 45.5 | 4,200,666 | 4,417,087 | 4.43 | 8.69 | -2.48 | 0.53 |
LI | qLI-D09 | D09 | bin225 | bin226 | 168.5 | 169.5 | 49,640,725 | 49,892,967 | 3.41 | 6.69 | -0.44 | -0.05 |
LI | qLI-D10 | D10 | bin21 | bin54 | 36.5 | 52.5 | 4,200,666 | 10,690,859 | 3.76 | 8.08 | -0.54 | 0.14 |
LI | qLI-D12 | D12 | bin191 | bin192 | 149.5 | 155.5 | 55,816,594 | 56,150,659 | 2.83 | 5.17 | 0.32 | -0.3 |
FL | qFL-A06 | A06 | bin26 | bin27 | 35.5 | 39.5 | 5,979,701 | 6,426,275 | 2.92 | 13.58 | -0.94 | 0.85 |
FL | qFL-A10 | A10 | bin53 | bin50 | 49.5 | 51.5 | 9,611,144 | 9,322,125 | 2.82 | 14.17 | 0.99 | -0.94 |
FL | qFL-D12 | D12 | bin109 | bin110 | 75.5 | 84.5 | 41,741,946 | 42,083,775 | 2.53 | 11.9 | 1.17 | -0.25 |
FS | qFS-A02 | A02 | bin279 | bin280 | 152.5 | 156.5 | 104,826,173 | 105,601,237 | 5.37 | 17.11 | 0.21 | 2.46 |
FS | qFS-A11 | A11 | bin129 | bin130 | 108.5 | 110.5 | 21,948,343 | 22,148,343 | 2.96 | 8.55 | 0.28 | -1.65 |
FS | qFS-D02 | D02 | bin94 | bin95 | 68.5 | 75.5 | 19,742,795 | 20,003,289 | 3.74 | 11.13 | 0.3 | -1.95 |
FS | qFS-D12 | D12 | bin154 | bin155 | 124.5 | 127.5 | 49,828,942 | 50,092,227 | 7.51 | 24.89 | 2.34 | -0.74 |
MIC | qMIC-A13 | A13 | bin343 | bin344 | 206.5 | 208.5 | 96,488,822 | 97,053,406 | 2.93 | 14.4 | 0.31 | 0.05 |
MIC | qMIC-D01 | D01 | bin58 | bin59 | 51.5 | 54.5 | 10,890,905 | 11,226,434 | 4.44 | 21.98 | -0.37 | 0.2 |
MIC | qMIC-D02 | D02 | bin3 | bin4 | 5.5 | 7.5 | 620,059 | 1,091,799 | 2.63 | 11.75 | 0.03 | -0.39 |
MIC | qMIC-D03 | D03 | bin10 | bin11 | 15.5 | 18.5 | 1,178,422 | 1,526,855 | 3.05 | 12.35 | 0.22 | -0.3 |
FU | qFU-A13 | A13 | bin233 | bin234 | 134.5 | 136.5 | 69,500,824 | 70,270,368 | 6.86 | 20.51 | 0.26 | -1.6 |
FU | qFU-D03 | D03 | bin13 | bin14 | 22.5 | 29.5 | 1,728,364 | 2,715,388 | 3.17 | 8.54 | 0.68 | 0.32 |
FU | qFU-D06 | D06 | bin37 | bin38 | 40.5 | 47.5 | 4,733,957 | 4,933,957 | 3.82 | 10.62 | 0.08 | -1.24 |
FU | qFU-D12-1 | D12 | bin10 | bin11 | 16.5 | 22.5 | 59,195,554 | 59,480,927 | 4.54 | 12.67 | 0.22 | -1.3 |
FU | qFU-D12-2 | D12 | bin212 | bin213 | 170.5 | 175.5 | 1,425,534 | 1,957,383 | 5.15 | 15.29 | 0.12 | 1.38 |
FE | qFE-A10 | A10 | bin217 | bin218 | 115.5 | 117.5 | 75,292,930 | 75,555,428 | 2.55 | 7.69 | 0.19 | -0.19 |
FE | qFE-D05-1 | D05 | bin94 | bin95 | 69.5 | 74.5 | 60,252,767 | 60,452,767 | 4.08 | 11.71 | -0.26 | -0.37 |
FE | qFE-D05-2 | D05 | bin295 | bin296 | 205.5 | 207.5 | 14,282,823 | 14,559,501 | 2.6 | 7.86 | -0.2 | -0.13 |
FE | qFE-D09 | D09 | bin131 | bin151 | 86.5 | 99.5 | 33,095,130 | 37,366,030 | 3.76 | 20.3 | 0.39 | -0.44 |