Table 2 Incompatibility group (inc) prediction based on inc-typing of the qnrB-carrying contigs and assignment to the best-matched reference plasmid. The frequency of occurrence of inc types is provided as absolute numbers in brackets
From: Characterization of qnrB-carrying plasmids from ESBL- and non-ESBL-producing Escherichia coli
inc prediction based on qnrB-carrying contig | Number of isolates | No. of closed plasmids | inc group of best-matching reference plasmid | Accession no. of the best-matching reference plasmids |
|---|---|---|---|---|
Col440I | 24 | 22 | Col440I (n = 22) | NC_013782.1 (n = 4), NZ_CP039508.1 (n = 3), NZ_CP039609.1 (n = 11), NZ_CP045445.1 (n = 1), NZ_CP045448.1 (n = 3) |
ColRNAI (n = 2) | NZ_LT985269.1 | |||
ColE10 | 1 | 1 | n.d. (n = 1) | n.d |
IncN | 1 | 0 | IncN (n = 1) | NC_019098.1 |
n.d | 7 | 0 | Col440I (n = 1) | NC_013782.1 (n = 1) |
InH2, IncH2A (n = 4) | NZ_CP048350.1 (n = 3), NZ_CP024813.1 (n = 1) | |||
- (n = 2) | NZ_CP039985.1 |