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Table 3 Accession-specific single nucleotide polymorphisms (SNPs) that were identified in eight representative B. rapa accessions

From: Identification of accession-specific variants and development of KASP markers for assessing the genetic makeup of Brassica rapa seeds

Category Accession ID Chromosome Position REF ALT CNU_11479 CNU_11480 26,021 26,022 28,059 28,061 CNU_11411 CNU_11412
Non-pekinensis CNU_11479 A03 21,060,850 A C CC AA AA AA AA AA AA AA
A06 3,079,806 A G GG AA AA AA AA AA AA AA
CNU_11480 A02 15,635,917 C T CC TT CC CC CC CC CC CC
A03 10,121,108 G A GG AA GG GG GG GG GG GG
Chinese germplasm 26,021 A02 18,369,509 C T CC CC TT CC CC CC CC CC
A06 6,118,599 G A GG GG AA GG GG GG GG GG
26,022 A01 6,548,614 A T AA AA AA TT AA AA AA AA
A03 3,737,651 A C AA AA AA CC AA AA AA AA
Japanese breeding 28,059 A07 21,078,330 G T GG GG GG GG TT GG GG GG
A07 23,181,319 G T GG GG GG GG TT GG GG GG
28,061 A03 22,285,257 G A GG GG GG GG GG AA GG GG
A10 450,622 A C AA AA AA AA AA CC AA AA
Korean breeding CNU_11411 A07 20,012,970 G A GG GG GG GG GG GG AA GG
A09 37,233,481 C T CC CC CC CC CC CC TT CC
CNU_11412 A07 21,781,162 C G CC CC CC CC CC CC CC GG
A09 42,427,036 C G CC CC CC CC CC CC CC GG
  1. REF Reference genome, ALT allele of reference genome and genetic variants, CNU Chungnam National University, a provider of 35 accessions used in this study