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Table 3 Genome distribution of variants (SNPs and InDels)

From: A large-scale population based organelle pan-genomes construction and phylogeny analysis reveal the genetic diversity and the evolutionary origins of chloroplast and mitochondrion in Brassica napus L.

Region Cp Variant Mt Variant
downstream/upstream 1,279 147
exonic
 synonymous / nonframeshift 427 64
 nonsynonymous / frameshift 322 76
 stopgain 5 1
 stoploss 1 1
 unknown 0 10
intergenic 0 26
intronic 369 8
splicing 0 1
ncRNA_exonic 4 1
Total a 2,407 335
  1. a Total number here was larger than described above because several locus had multiple variants