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Table 1 Evaluation of assembly on simulated sequences

From: B-assembler: a circular bacterial genome assembler

Asm # ctg Largest contig Cov % # Local mis # SNV # Indels Time(min) Memory(G)
B-assembler L 1 668,045 98.446 0 0.9 0 56 8.9
wtdbg2 1 658,000 96.842 1 217.3 216.08 11 1.7
Flye 1 701,022 98.444 0 0.89 74.01 724 30.1
Canu 1 676,819 98.455 0 1.62 44.26 3,848 37.2
Unicycler L 1 680,945 99.839 0 65.47 225.6 70 3.5
B-assembler H 1 676,353 99.67 0 0 0 66 11.7
Unicycler H 1 677,975 99.809 0 7.48 5.15 1634 14.8
hybridSPAdes 2 433,245 99.947 1 6.78 0.88 42 16
haslr 1 613,987 90.47 0 1.79 13.36 4 1.3
lathe 1 673,506 95.49 1 12.48 26.75 85 6.7
  1. # Local mis Local misasemblies, Cov % assembled genome fraction, # SNVs number of mismatches per 100kbp, # Indels number of Indels per 100kbp, L Long-read-only mode, H Hybrid mode