Table 1 Evaluation of assembly on simulated sequences
Asm | # ctg | Largest contig | Cov % | # Local mis | # SNV | # Indels | Time(min) | Memory(G) |
|---|---|---|---|---|---|---|---|---|
B-assembler L | 1 | 668,045 | 98.446 | 0 | 0.9 | 0 | 56 | 8.9 |
wtdbg2 | 1 | 658,000 | 96.842 | 1 | 217.3 | 216.08 | 11 | 1.7 |
Flye | 1 | 701,022 | 98.444 | 0 | 0.89 | 74.01 | 724 | 30.1 |
Canu | 1 | 676,819 | 98.455 | 0 | 1.62 | 44.26 | 3,848 | 37.2 |
Unicycler L | 1 | 680,945 | 99.839 | 0 | 65.47 | 225.6 | 70 | 3.5 |
B-assembler H | 1 | 676,353 | 99.67 | 0 | 0 | 0 | 66 | 11.7 |
Unicycler H | 1 | 677,975 | 99.809 | 0 | 7.48 | 5.15 | 1634 | 14.8 |
hybridSPAdes | 2 | 433,245 | 99.947 | 1 | 6.78 | 0.88 | 42 | 16 |
haslr | 1 | 613,987 | 90.47 | 0 | 1.79 | 13.36 | 4 | 1.3 |
lathe | 1 | 673,506 | 95.49 | 1 | 12.48 | 26.75 | 85 | 6.7 |