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Table 2 Evaluation of assembly on ONT sequences

From: B-assembler: a circular bacterial genome assembler

Genome Asm # ctg Length Supl. A Supl. C M.R Time (min) Memory (G) # Mapped PCR Indels SNV
M.arginini B-assembler L 1 681,050 703 0 88.62 88 11.5 68 35 16
B-assembler H 1 685,432 689 0 88.65 1294 23.8 70 7 16
wtdbg2 1 660,247 2,806 12 86.92 7 2.1 57 84 156
Flye 3 700,499 958 1 87.93 29 11.1 64 36 60
Canu 1 793,572 873 1 87.89 2,883 15.7 65 39 41
Unicycler L 2 755,568 759 2 87.91 73 10.6 66 42 99
Unicycler H 61 407,877 8,646 10 76.43 1410 24.5 68 12 50
M.amphoriforme B-assembler L 1 1,047,044 1,290 0 98.95 86 15.4 / / /
wtdbg2 1 1,014,839 3,089 7 98.74 10 3.2 / / /
Flye 1 1,052,944 2,218 1 98.7 254 9.1 / / /
Canu 1 1,066,644 1,719 0 98.92 2,933 28.8 / / /
Unicycler L 1 1,066,967 2,122 1 98.81 97 17.9 / / /
  1. # ctg number of assembled contigs, Suppl. A number of Supplementary Alignments, Suppl. C number of Supplementary alignment Clusters, M.R. Mapping Rate, B-assembler L., Unicycler L the long-read modes of B-assembler and Unicycler, B-assembler H. and Unicycler H. the hybrid-read modes of B-assembler and Unicycler