Table 2 Evaluation of assembly on ONT sequences
Genome | Asm | # ctg | Length | Supl. A | Supl. C | M.R | Time (min) | Memory (G) | # Mapped PCR | Indels | SNV |
|---|---|---|---|---|---|---|---|---|---|---|---|
M.arginini | B-assembler L | 1 | 681,050 | 703 | 0 | 88.62 | 88 | 11.5 | 68 | 35 | 16 |
B-assembler H | 1 | 685,432 | 689 | 0 | 88.65 | 1294 | 23.8 | 70 | 7 | 16 | |
wtdbg2 | 1 | 660,247 | 2,806 | 12 | 86.92 | 7 | 2.1 | 57 | 84 | 156 | |
Flye | 3 | 700,499 | 958 | 1 | 87.93 | 29 | 11.1 | 64 | 36 | 60 | |
Canu | 1 | 793,572 | 873 | 1 | 87.89 | 2,883 | 15.7 | 65 | 39 | 41 | |
Unicycler L | 2 | 755,568 | 759 | 2 | 87.91 | 73 | 10.6 | 66 | 42 | 99 | |
Unicycler H | 61 | 407,877 | 8,646 | 10 | 76.43 | 1410 | 24.5 | 68 | 12 | 50 | |
M.amphoriforme | B-assembler L | 1 | 1,047,044 | 1,290 | 0 | 98.95 | 86 | 15.4 | / | / | / |
wtdbg2 | 1 | 1,014,839 | 3,089 | 7 | 98.74 | 10 | 3.2 | / | / | / | |
Flye | 1 | 1,052,944 | 2,218 | 1 | 98.7 | 254 | 9.1 | / | / | / | |
Canu | 1 | 1,066,644 | 1,719 | 0 | 98.92 | 2,933 | 28.8 | / | / | / | |
Unicycler L | 1 | 1,066,967 | 2,122 | 1 | 98.81 | 97 | 17.9 | / | / | / |