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Table 2 Lung Condition-Specific Regulatory Edges Comparison

From: Identification of condition-specific regulatory mechanisms in normal and cancerous human lung tissue

Comparison

Total Edges

DEseq2*

TR/TF*

DEseq2* + TR/TF*

TF & TR Up*

TF & TR Down*

TF Up & TR Down*

TF Down & TR Up*

LUAD_vs_GTEx

1972

1497

1019

813

89

128

98

498

LUSC_vs_GTEx

4037

2917

3036

2229

533

479

618

599

  1. Up Up in tumor, Down down in tumor
  2. *Significance was adj. p < 0.001 for DESeq2 and p < 0.001 for TR/TF ratio test
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BMC Genomics

ISSN: 1471-2164

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