Fig. 2
From: spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
Enhanced visualization spatialLIBD features: Using the example spatialLIBD web application from https://libd.shinyapps.io/spatialLIBD_Human_Lymph_Node_10x/ we illustrate some recent enhancements. The data is from the human lymph node example dataset by 10x Genomics. A Expression of the POLR2A gene with a point size of 2.25 and using the reversed magma colorblind-friendly continuous scale: low values are in white. There are nine color scales options and each can be reversed. The transparency of the spots can be controlled as well. B A side-by-side view of the histology and the graph-based clusters produced by Space Ranger. The original lowres image from Space Ranger has been edited with spatialLIBD: enhance, normalize, equalize, transparent color pink, and transparent fuzz 40