Fig. 1
From: Characterising genome architectures using genome decomposition analysis
Overview of the GDA pipeline. A Feature sets are derived from the genome reference sequence (seq), repeat finding (rep), gene annotations (gene) and evolutionary relationships between genes (orth). The genome is divided into user-defined, non-overlapping windows (e.g. 5kbp in length) from which the value of each feature is determined. B The resulting matrix of feature values per window is embedded in two dimensions and clustered to identify groups of windows with similar properties. C The data can be explored in a number of ways using a web-browser based app. The clustering labels are mapped back to the chromosomes to highlight architectural features and a heatmap displays the features which define the clusters